Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0502 ATGGGGCTAGGGAAGACTCTGCAAGCCATCTCTTTCTTGAGCTACATGAAAGTCCATCAGAAGTCACCTGGGCCATTTTTGGTATTATGTCCTCTAAGTGTGACGGATGGTTGGGTATCAGAGATAGCAAACTTTGCTCCAAAATTAAGAGTTCTTAGGTATGTTGGTGACAAAGAACACAGACGCAGTCTTCGAAGGACAATATATGAGCAAGTAAAAGAACAGTGCTCAAAGTCTGATGTATCAGCCCTTCCTTTTGACTTGCTGCTGACAACATATGATATAGCATTGATGGATCAGCATTTTCTCTCCCAAATTCCATGGCATTATGCGATAATTGATGAAGCACAAAGACTTAAAAATCCTTCAAGTGTGTTATATAATGTTCTTAAAGAACGGTTTGTCATGCCAAGACGGTTACTGATGACTGGAACACCTATTCAGAACAATCTCACAGAACTTTGGGCTCTGATGCATTTTTGTATGCCGTCAATATTTGGGACGTTAGAGCAGTTTCTTTCCACATTCAAGGAAGACGGACATCCTTCTTCAGGTGAAAAGGTGGCTGAAGTTAAGGATCAGTTCAGAACTTTAAAATATATATTGGGAGCTTTCATGCTTCGTCGAATGAAATCTAAGCTTATTGAGTGTGGAACTCTTGTGCTGCCCCCTCTTACTGAGATTACTGTGATGGCTCCACTGGTTTCCCTGCAAAAGAAGGTGTATATGTCAATATTGAGGAAGGAACTTCCTAAACTTCTTGCATTCTCTTCTGGACCATCAGGTCACCAGTCCTTACAGAATATTGTAATACAGTTAAGAAAAGCATGTAGCCATCCCTATCTTTTCCCTGGTATTGAGCCTGAACCATATGAGGAGGGTGAACACCTGGTTCAGGCTAGTGGTAAACTTATAATCTTGGATCAACTACTTCAGAAGCTATATAACTCTGGACATCGTGTTCTTCTGTTTGCTCAGATGACTCATACACTAGATATTTTACAGGATTTCATGGAGTTGCGGAAATATTCTTATGAGCGTCTTGATGGATCAGTTCGGGCTGAGGAGCGCTTTTCTGCAATAAGAAGTTTCAGCCGGCAAATAGTTGAAGGCAGTTTGAATTCCCAAGATGTGCAAAGTAGTGCTTTTGTCTTTATGATCTCTACAAGAGCTGGGGGCGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAGGCTTTGCAGCGGGCACACCGTATTGGTCAGATGAATCATGTGTTGTCTATAAATCTAGTTACAGGACGCACGGTAGAGGAGATTATAATGCGCAGAGCAGAGAGGAAGCTGCAGCTTAGCCATAATGTTGTCGGGGAGGTTGACATTGATAGGGAAGGGAAGGAAATGGCTGGAGCTGAAGCTGGTGATTTGCGATCTGTCATATTTGGGTTACGTATGATTGATCCTTCAGAAATCAATAATGATGAATCAAGTGAACCAAATATGTCAGAATTGGATGCCATGGCTGACAAGGTAGTAGCAATCCGCCATGAACAACAATTGGGCAAGGATGATAGGAAATTTGAGGTTAACCCAATGGATCTTTTAAAAGGACATGATCTTATTATGGACAGAAGTTCCGTTTCTGTTGATTTTGACCCTGGTCTAGATGAAGCTTCATATCTTGTATGGGTGGAAAAGTTCAAGGAGGCATCCCAATCAAGTGATGATCCAATTATACAAGTGGGAAATAGAAGAAAGTTACCTGAGGAAAAGCTTCTAAAACTTGAAGCTGCAAGGAAGAAGGCAGAGGAGGAGAAGCTAGCCAAGTGGGAAGCTCATGGTTACAATTCATTATCTGTCAAAGATCCTCCTTCCCATGTTGATGTTGACATGATATCAGATTCAGGTTCTGTTGACTTTGTTTATGGAGATTGTACACTTCCCTCAAAAGTTTGTCCATCTGAGGCTACTATCATATTCAGTTGCATTGATGACTCTGGGATCTGGGGCCATGGAGGAATGTTTGATGCCCTGGCCAGGCTTTCTTCAAGTGTTCCTGATGCATATCAACGAGCTTCTGAATTTAAGGACCTTCATCTTGGTGATCTTCATTTTATAAAAATCAATGAGGACTGTGAAGAACAGAGAATGGACTGTAATGCTCCTCAGTGGGTGGCTCTCGCTGTAGTACAATCATATAATCCTAGGCGTAAAGTACCTCGCAGCAATATCTCTGTTCCTGACTTGGAATGTTGCTTATCAAAGGCGTCATTCTTGGCTGCTCAAAAATCTGCTTCAATCCACATGCCACGTATTGGCTATCAAGATCGCTCAGAATGGTATACCGTGGAACGTCTTCTACGAAAATATGCTTCCCTATATGGCATAAAGATTTTTGTGTATCCTTCTTTCCCTTGCTCTCATTCTCATGATCCACACACCCAAGCACACACACTGCAGAGTATGAACACACCAAATTAA 2499 0.419 MGLGKTLQAISFLSYMKVHQKSPGPFLVLCPLSVTDGWVSEIANFAPKLRVLRYVGDKEHRRSLRRTIYEQVKEQCSKSDVSALPFDLLLTTYDIALMDQHFLSQIPWHYAIIDEAQRLKNPSSVLYNVLKERFVMPRRLLMTGTPIQNNLTELWALMHFCMPSIFGTLEQFLSTFKEDGHPSSGEKVAEVKDQFRTLKYILGAFMLRRMKSKLIECGTLVLPPLTEITVMAPLVSLQKKVYMSILRKELPKLLAFSSGPSGHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLIILDQLLQKLYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLDGSVRAEERFSAIRSFSRQIVEGSLNSQDVQSSAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTGRTVEEIIMRRAERKLQLSHNVVGEVDIDREGKEMAGAEAGDLRSVIFGLRMIDPSEINNDESSEPNMSELDAMADKVVAIRHEQQLGKDDRKFEVNPMDLLKGHDLIMDRSSVSVDFDPGLDEASYLVWVEKFKEASQSSDDPIIQVGNRRKLPEEKLLKLEAARKKAEEEKLAKWEAHGYNSLSVKDPPSHVDVDMISDSGSVDFVYGDCTLPSKVCPSEATIIFSCIDDSGIWGHGGMFDALARLSSSVPDAYQRASEFKDLHLGDLHFIKINEDCEEQRMDCNAPQWVALAVVQSYNPRRKVPRSNISVPDLECCLSKASFLAAQKSASIHMPRIGYQDRSEWYTVERLLRKYASLYGIKIFVYPSFPCSHSHDPHTQAHTLQSMNTPN* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0502 832 CDD Macro_Poa1p-like_SNF2 643 800 - -
Vvi15g0502 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 209 IPR027417 -
Vvi15g0502 832 SMART helicmild6 332 427 IPR001650 -
Vvi15g0502 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 471 IPR027417 -
Vvi15g0502 832 CDD SF2_C_SNF 295 438 - -
Vvi15g0502 832 FunFam Putative helicase CHR10 220 531 - -
Vvi15g0502 832 Pfam Helicase conserved C-terminal domain 303 427 IPR001650 -
Vvi15g0502 832 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 164 IPR014001 -
Vvi15g0502 832 Pfam SNF2-related domain 1 282 IPR000330 GO:0005524|GO:0140658
Vvi15g0502 832 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 306 475 IPR001650 -
Vvi15g0502 832 Gene3D Leucine Aminopeptidase, subunit E, domain 1 640 808 IPR043472 -
Vvi15g0502 832 SMART ultradead3 1 172 IPR014001 -
Vvi15g0502 832 SUPERFAMILY Macro domain-like 644 808 IPR043472 -
Vvi15g0502 832 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 1 551 IPR031053 GO:0003678|GO:0006281|GO:0006338
Vvi15g0502 832 Gene3D - 221 534 IPR027417 -
Vvi15g0502 832 Gene3D - 1 219 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0502 Vvi-Chr15 13101990 13116477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0502 301 457 RAD5 or RAD16-like Gene Family AT5G22750 35.032 7.15e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi15g0502 SNF2_N 2.2e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0502 K20092 - vvi:100247895 1544.64