Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0499 ATGGGGAGCACAGGTGAACCAGACCGAAAACGACGTCACTTTAGCTCTCTGTCGCCCACGGCTGCTACTGCTAAGAAGATGCCATTCTTGCCCGTATCTGAAGATAAAAAGCTTGATACTGCTGTACTTCAGTATCAAAATCAAAAGCTAAAACAGAAGTTAGAAGCTCAGAAGGTTGAGTGTTCTGCTCTTGAGAATAAGTTCAGCCAACTGAAGGAGACACAACAGTCATATAATACCACATTAACACTGGTTAATAAAACTTGGAGAGAGCTGGTTGATAACTTGGAAACATGTTCTGTCCACCTAAAGGACTCAGCAAGTGCTGGACGACATGTTAAACTTCCTTCAACAACAGAGGATGGAAACTCTTGCTTACAGGATGCTTTTCTCAGCCGGCTCATAGAAACGGGTGCAACTGAAAGTTGCTCTGCAAATGACTTTTCTGATCGGATGGAAGAAGACAGACCAACATCCTGTGGAAAGACTAAGAACAGTTTAAGTAATATTGTATCTACCATTAATGATCTGTGGTGTTTGAAGGATGGATTATATGCCGCAGTTTTAGAGGCACTTCCAGAAGATGGTTTATGCAACAAAAAGATATCCAGTGATTTACATGCAGAAGTTAATAACATGAGATTGGCATTTGGTGATCTTCACTTGAAGCACAAATCAGTCACAAGGGACATGCAGAGCCATCGGGACATAGATGCCAAGAATAAGGCTGAGCTTAAACGTTTAAGAGGGGAATTGGAGAGCACTGTTGCAGAGCTGGAAGAAAGTAATTGTAAATTGGTAACTCTTAAAGCAGAGAGAGATGCAGCTAAAGGGGCATTTTTCCCCATCTTAAGCTTGGGGAGTAAAAATGTTGCAGGAGATAAGGCCAGAGATAAACAAAAAGATCTGCATGATATGGAGGCTACACTCAAGGAGCTATTGGACCAATCTTCATCTCGCCTACTAGAACTGAAGGCTCTTTATGAAGAAAGGATAGGAATATTAAAGCAACTATCTAATTTGCAGAACACTTTGAAGAATGTGAAGTGCATTTCGTCTTCTTCAGCCTATGTCTTGGTAACAGATCAACTGGAAAAGTCGAAAGCAGAAGTTGTCCATTATCAGGCCTTATTTGAGAAACTACAGGTTGAGAAGGATAACCTTGTCTGGAGGGAAAAGGAAGTGAATATGAAAAATGACTTTGTTGATGTTTTTCGAAGATCTTCTGTAGTTACTGATTCTAGATTATCAGAGCTCAGAATAGAGATACAGAATCAAATTAATGAAAGAAACCTGATTGAAATTAAGCTGGAAGAGGCATCAAGAGAACCAGGAAGAAAAGAAATCATTGCAGAATTTAAAGCCCTACTTTCTTCATTTCCTGACAACATGGGCACTATGCAAAATCAACTTCGTAAATACAAAGAGGCTGCTTCCGATGTTCACTCTCTGCGGGCTGATGTGCAGTCTCTATCCAGTGTTCTTGAGAGGAAGGAAAAAGAGTTGGAAACTTTATCCACTAGATCTGCTGACCAGGTTGCTGATATACGGAAGTTGCAAGCTTTGATTCAGGACTTGGAGGAGAGTGATATACAATTGAAGCTTATTTTGGAAATGTATAGATGTGAATCTGTTGATTCAAGGGATGTCTTAGAAGCTAGGGATAAAGAATACAAGGCATGGGCTCATGTGCAAAGCCTCAAGTCTTCTCTCAATGAGCATAGCCTGGAATTGCGAGTTAAAACAGCAATTGAAGCTGAAGCCTTATCTCAGCAAAGGCTAGCTGCTGCTGAAGCGGTGATTGTTGACCTGAGACAGAAGTTGGAAGCTTCTAAGAGGGATATGTTTAGACTCTCAGATGTCCTGAAATCCAAGCATGAGGAAAATGAAGCCTACTTATCTGAGATAGAAACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAGCTTGTTTTAGAGGGTGTGAGGTCAAGACAGCTGCAGGATTCTCTACTGATGGAAAAACAAACCATGGAGAGGGGATTTCAACGAGCCACTACATCTCTTGGTTTTTTTGACATGAAAGCTGGAAGAATTGAAGATCAGTTGAAGATGTGCTCAGATCAGGTTCAAAAACTTGCAGAAGATAGATTGCAAAGCTTAGGTACTTTGGCTAATTTCCAAAAAAGGTTACTGGATGTGACTAGATTATCTCAGCAAGCAAGGGAGTCACTGGAGGAATCACAATCCAAAGTCGACAAGAGTCGAGTTAGTCTTGGAGAGCTGCAGATTGAACTAGAGAAAGAGAGGTTTGAAAAGAAAAGAACAGAGGAGGAATTGGAAGTTGTAAGGAGAAAGGCTTCACGTCTTAGAGCACAGACAGAGGGGTCATCGATTGTGGACAAGCTTCGACAGGAACTCAGAGAATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAGGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGAATTATTGAAGCTCGTAACCGCAAGTGTCCTGTATGTTCTGCAAGTTTTGGGCCCAATGATGTCAAACCCGTTTACATCTGA 2637 0.4118 MGSTGEPDRKRRHFSSLSPTAATAKKMPFLPVSEDKKLDTAVLQYQNQKLKQKLEAQKVECSALENKFSQLKETQQSYNTTLTLVNKTWRELVDNLETCSVHLKDSASAGRHVKLPSTTEDGNSCLQDAFLSRLIETGATESCSANDFSDRMEEDRPTSCGKTKNSLSNIVSTINDLWCLKDGLYAAVLEALPEDGLCNKKISSDLHAEVNNMRLAFGDLHLKHKSVTRDMQSHRDIDAKNKAELKRLRGELESTVAELEESNCKLVTLKAERDAAKGAFFPILSLGSKNVAGDKARDKQKDLHDMEATLKELLDQSSSRLLELKALYEERIGILKQLSNLQNTLKNVKCISSSSAYVLVTDQLEKSKAEVVHYQALFEKLQVEKDNLVWREKEVNMKNDFVDVFRRSSVVTDSRLSELRIEIQNQINERNLIEIKLEEASREPGRKEIIAEFKALLSSFPDNMGTMQNQLRKYKEAASDVHSLRADVQSLSSVLERKEKELETLSTRSADQVADIRKLQALIQDLEESDIQLKLILEMYRCESVDSRDVLEARDKEYKAWAHVQSLKSSLNEHSLELRVKTAIEAEALSQQRLAAAEAVIVDLRQKLEASKRDMFRLSDVLKSKHEENEAYLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRSRQLQDSLLMEKQTMERGFQRATTSLGFFDMKAGRIEDQLKMCSDQVQKLAEDRLQSLGTLANFQKRLLDVTRLSQQARESLEESQSKVDKSRVSLGELQIELEKERFEKKRTEEELEVVRRKASRLRAQTEGSSIVDKLRQELREYRDILKCGICHERPKEVVITKCYHLFCNPCVQRIIEARNRKCPVCSASFGPNDVKPVYI* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0499 878 Coils Coil 242 272 - -
Vvi15g0499 878 MobiDBLite consensus disorder prediction 1 15 - -
Vvi15g0499 878 SUPERFAMILY RING/U-box 819 877 - -
Vvi15g0499 878 MobiDBLite consensus disorder prediction 1 22 - -
Vvi15g0499 878 PANTHER RING FINGER PROTEIN-RELATED 1 878 IPR013956 GO:0004842|GO:0010390
Vvi15g0499 878 Coils Coil 47 74 - -
Vvi15g0499 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 878 IPR013083 -
Vvi15g0499 878 Coils Coil 296 316 - -
Vvi15g0499 878 Coils Coil 416 443 - -
Vvi15g0499 878 Pfam Zinc finger, C3HC4 type (RING finger) 824 866 - -
Vvi15g0499 878 Coils Coil 594 614 - -
Vvi15g0499 878 SMART ring_2 826 864 IPR001841 -
Vvi15g0499 878 ProSitePatterns Zinc finger RING-type signature. 841 850 IPR017907 -
Vvi15g0499 878 FunFam E3 ubiquitin protein ligase 807 878 - -
Vvi15g0499 878 Coils Coil 769 803 - -
Vvi15g0499 878 CDD RING-HC_Bre1-like 818 876 - -
Vvi15g0499 878 ProSiteProfiles Zinc finger RING-type profile. 826 865 IPR001841 -
Vvi15g0499 878 Coils Coil 364 384 - -
Vvi15g0499 878 Coils Coil 481 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0499 Vvi-Chr15 12989669 13025163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0499 826 877 C3H Transcription Factor Family AT1G74990 37.037 2.05e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0499 K10696 - vvi:100241021 1670.21