Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0496 ATGGAAAAGCTCAACATAGAGAGTGATGCTCAAGACAATTTCAATATTCTTTCTTCCTCAACCTCCACTTCCTCTTCATCTTCTTTCCCCTCCTCCTCCTCCTCATCATCCTCATCGTCCTCTTCCAATGAATTGGTTCCCTTTCCGGGAGGGAATTCAGAGGATGACATGCCGAGACAAGGTGGGAGAAAAGTACAAGGAATGAAAAATGGGAATGAGAGTAGGAAGAGGCAGAAGACGGAGAATGATGGGAAGCAGCATCCGACGTATCGAGGAGTGCGAATGCGAAATTGGGGCAAATGGGTGTCGGAGATCCGGGAGCCCAAGAAGAAGTCTAGGATTTGGCTAGGGACGTATCCTACGGCGGAAATGGCAGCTCGGGCACACGATGTGGCGGCGCTCGCCATCAAGGGTAGCTCTCCCCACCTCAATTTCCCTGAATTGGCGCACGCGCTTCCCCGCCCCGCCTCTACCTCCCCTAAGGACATCCAAGCCGCGGCGGCGGAGGCGGCCAACACCACATTCTCGCAGCCTGATGAGACGGAAGTTGAAGCTGAGCACCCCGTATCATCGGAAAACACGCTGGAGTCATCAAATTCAACGTCAGTAGACAACGATGACGCGTTTTTTGACCTCCCTGATATAGTGATGGATGTCATGGACCTTACCGGAGATAGGTTTTGCTACTACTACTATCCGTTATGGCAGCCGGCCGGAGGGGCTGATAACATATTCCGGCCGGTGGAGGAGCCATTTTTATGGGAGTAG 768 0.526 MEKLNIESDAQDNFNILSSSTSTSSSSSFPSSSSSSSSSSSSNELVPFPGGNSEDDMPRQGGRKVQGMKNGNESRKRQKTENDGKQHPTYRGVRMRNWGKWVSEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGSSPHLNFPELAHALPRPASTSPKDIQAAAAEAANTTFSQPDETEVEAEHPVSSENTLESSNSTSVDNDDAFFDLPDIVMDVMDLTGDRFCYYYYPLWQPAGGADNIFRPVEEPFLWE* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0496 255 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Vvi15g0496 255 MobiDBLite consensus disorder prediction 69 90 - -
Vvi15g0496 255 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Vvi15g0496 255 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Vvi15g0496 255 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Vvi15g0496 255 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Vvi15g0496 255 MobiDBLite consensus disorder prediction 16 48 - -
Vvi15g0496 255 MobiDBLite consensus disorder prediction 16 92 - -
Vvi15g0496 255 MobiDBLite consensus disorder prediction 152 203 - -
Vvi15g0496 255 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Vvi15g0496 255 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Vvi15g0496 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 72 219 - -
Vvi15g0496 255 FunFam Ethylene-responsive transcription factor 2 88 147 - -
Vvi15g0496 255 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0496 Vvi-Chr15 12934619 12935386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0496 76 253 AP2-EREBP Transcription Factor Family AT2G44940 52.381 3.16e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi15g0496 AP2 9.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0496 - - vvi:100256420 478.404