Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0495 ATGTTCGGGCGTCCCCCAAGGAGGAGTGATAGCACCAAGTACTATGATATTCTTGGAGTTTCAAAAAATGCCAATCAAGATGAACTGAAGAAGGCATATAAAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAGTTCAAGGAGTTGTCTCAAGCTTATGATGTTCTTAGCGATCCAGATAAAAGAGAAATCTATGACCAATATGGTGAAGATGGGCTTAAAGAGGGAATGGGAGGAGGTGGTGGCTTTCATAATCCAGTTGATATATTTGAATCATTTTTTGGTGGAGGAGCTTTTGGTGGTGGTGGTAGCTCAAGAGGAAGAAGGCAGAAACGAGGTGAAGATGTTGTGCATACTTTGAAGGTTTCTTTGGAGGACTTGTATAATGGCACATCAAAGAAATTATCTCTATCAAGGAATGTTATGTGCCCAAAATGTAAAGGAAAAGGTTCAAAGAGTGGGGCATCTGGGAGATGTTATGGCTGCCAAGGTTCAGGAATGAAGATTACAACCCGACAGATTGCACCAGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGGTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGGTTAGTACGGAAAAGAAGGTACTGGAGGTGCATGTTGAGAAGGGAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCGCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCATGCCAAGTTCAAGCGGAAATATGACGATCTCTACGTAGAGCATACCCTCAGTTTAACGGAGGCCCTCTGTGGGTTTCAGTTTGCTTTGACTCATCTTGATGGCAGGCAGCTTCTGATTAAATCAAACCCTGGCGAGATCATCAAACCAGATCAATACAAAGCAATCAATGATGAGGGAATGCCGCACCACCAAAGACCCTTCATGAAGGGTAAGCTTTACATCCATTTTGATGTGGAGTTCCCAGAGTCTGGAATTCTATCCCCTGATCAATGCAAGGCTTTGGAGTCGATCCTACCTCAAAAGCGGAGCAAGCAAATATCAGCAATGGAGGTAGACGAGGCTGAGGAGACAACATTGTATGATGTGAACATCGAGGAAGAGATGAGGCGGAAGCAGCAGCAACAGCAACACGAGGCGTATGATGAGGACGATGATGATTTTGGGGCACCTCGGGTGCAGTGCGCCCAGCAATGA 1260 0.4556 MFGRPPRRSDSTKYYDILGVSKNANQDELKKAYKKAAIKNHPDKGGDPEKFKELSQAYDVLSDPDKREIYDQYGEDGLKEGMGGGGGFHNPVDIFESFFGGGAFGGGGSSRGRRQKRGEDVVHTLKVSLEDLYNGTSKKLSLSRNVMCPKCKGKGSKSGASGRCYGCQGSGMKITTRQIAPGMIQQMQHVCHECRGSGEVISERDRCPQCKGNKVSTEKKVLEVHVEKGMQHGERIVFQGEADQAPDTITGDIVFVLQLKDHAKFKRKYDDLYVEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPDQYKAINDEGMPHHQRPFMKGKLYIHFDVEFPESGILSPDQCKALESILPQKRSKQISAMEVDEAEETTLYDVNIEEEMRRKQQQQQHEAYDEDDDDFGAPRVQCAQQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0495 419 CDD DnaJ 14 63 IPR001623 -
Vvi15g0495 419 Gene3D - 148 214 - -
Vvi15g0495 419 FunFam DnaJ subfamily A member 2 148 214 - -
Vvi15g0495 419 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vvi15g0495 419 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vvi15g0495 419 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vvi15g0495 419 FunFam Chaperone protein dnaJ 3 215 255 - -
Vvi15g0495 419 CDD DnaJ_C 119 345 - -
Vvi15g0495 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 216 IPR036410 -
Vvi15g0495 419 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Vvi15g0495 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 345 IPR008971 GO:0006457|GO:0051082
Vvi15g0495 419 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vvi15g0495 419 Gene3D - 110 260 - -
Vvi15g0495 419 Hamap Chaperone protein DnaJ [dnaJ]. 10 389 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi15g0495 419 MobiDBLite consensus disorder prediction 384 419 - -
Vvi15g0495 419 MobiDBLite consensus disorder prediction 384 411 - -
Vvi15g0495 419 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Vvi15g0495 419 Gene3D - 262 344 - -
Vvi15g0495 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 401 IPR044713 GO:0006457|GO:0030544
Vvi15g0495 419 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Vvi15g0495 419 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Vvi15g0495 419 Gene3D DnaJ domain 10 109 IPR036869 -
Vvi15g0495 419 Pfam DnaJ domain 13 71 IPR001623 -
Vvi15g0495 419 FunFam DnaJ subfamily A member 2 262 344 - -
Vvi15g0495 419 FunFam dnaJ protein homolog 10 109 - -
Vvi15g0495 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 262 IPR008971 GO:0006457|GO:0051082
Vvi15g0495 419 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Vvi15g0495 419 SMART dnaj_3 12 66 IPR001623 -
Vvi15g0495 419 Pfam DnaJ C terminal domain 122 343 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0495 Vvi-Chr15 12897965 12903767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0495 8 73 C2H2 Transcription Factor Family AT1G74250 40.000 1.22e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0495 K09503 - vvi:100242705 793.497