Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0490 ATGGAAGGAGAGAGAGAGGAGATAAAGAAAGGGCCATGGAAGGCAGAGGAAGATGAGGTGCTGATAAACCATGTGAACAAGTATGGCCCCAGAGACTGGAGCTCCATTCGCTCCAAAGGGCTCTTGCAGCGCACTGGCAAGTCCTGTCGCCTCCGTTGGGTCAACAAACTCAGACCCAACTTGAAGAATGGGTGCAAGTTTTCATCAGAGGAGGAGAGGCTGGTGATAGAGTTGCAGGCACAGTTTGGGAACAAATGGGCGAGAATCGCTACGTATTTGCCAGGGAGAACTGATAATGATGTGAAGAATTTTTGGAGCAGCAGGCAGAAGAGGTTGGCCAGGATTTTGCAGACTCCATCTTCTTCACCATCTTCTTCCCAATCACACAAAAACCCTGGGGAAGTCCCATTTCTTCATGATTTCCCAACTCTAGAGGTCCCCAACTTCAGTGCTTCAATGGAGGAAGACTTATCCTCAAAATCATCCTATATTGACAACTCTGAAATGATCAAGTTGGTGGGTTTACCAGATATGGTAGAGCCTAACTTGCCGGCTTTGGAGACCAACCTTTTCCAACTTCAGTTCAACCATGCTGATCAGAAGACTCCATGCATGGAGTCCCAATCACAATTCCCCTTCCCTCACCTCCCACAACCCCAACCAGCCCTCACGCTCTCGCCAGAGAGCCAAGAACTGGTGGCTAGACTTGATGATCCCAACTTTTTTGATGTATTTGGAGACCGAGATGTTTCTCAGGAACTGGGGAATGGAGCTCAATTTCCTGTTGAGCCAACATTTTTTGAACTGGAAAGTTGCAAAAGCTGTGGGAAACGAAAGGAGAACCCCATGACTCCGGACAGCTTCTTTGATGACTTCCCAACCGACATGTTTGATCATATGGAGCCCCTTCCGAGCCCGTCAGAGTGGTGA 930 0.4849 MEGEREEIKKGPWKAEEDEVLINHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSSEEERLVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQTPSSSPSSSQSHKNPGEVPFLHDFPTLEVPNFSASMEEDLSSKSSYIDNSEMIKLVGLPDMVEPNLPALETNLFQLQFNHADQKTPCMESQSQFPFPHLPQPQPALTLSPESQELVARLDDPNFFDVFGDRDVSQELGNGAQFPVEPTFFELESCKSCGKRKENPMTPDSFFDDFPTDMFDHMEPLPSPSEW* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0490 309 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Vvi15g0490 309 Gene3D - 2 63 - -
Vvi15g0490 309 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vvi15g0490 309 MobiDBLite consensus disorder prediction 278 309 - -
Vvi15g0490 309 CDD SANT 66 105 IPR001005 -
Vvi15g0490 309 FunFam Transcription factor GAMYB 65 137 - -
Vvi15g0490 309 CDD SANT 12 57 IPR001005 -
Vvi15g0490 309 Gene3D - 65 134 - -
Vvi15g0490 309 PANTHER TRANSCRIPTION FACTOR DUO1 3 308 - -
Vvi15g0490 309 FunFam MYB transcription factor 10 62 - -
Vvi15g0490 309 MobiDBLite consensus disorder prediction 116 135 - -
Vvi15g0490 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Vvi15g0490 309 MobiDBLite consensus disorder prediction 116 132 - -
Vvi15g0490 309 Pfam Myb-like DNA-binding domain 66 105 IPR001005 -
Vvi15g0490 309 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Vvi15g0490 309 ProSiteProfiles Myb-like domain profile. 66 109 IPR001005 -
Vvi15g0490 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 113 IPR017930 -
Vvi15g0490 309 SMART sant 63 111 IPR001005 -
Vvi15g0490 309 SMART sant 9 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0490 Vvi-Chr15 12773481 12774819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0490 1 306 MYB Transcription Factor Family AT3G60460 51.385 3.39e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi15g0490 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0490 K09422 - vvi:100256500 626.706