Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0478 ATGCCCTTCCTCTCCACCATCACCATCACCTCTCTCTGCACCTATCTCTCCCGCCAACTCAGCTCTCTCCCAAAGAACTCAAACCTCTCCCACATCCCCTCTAAGCACAGATCTCAAGCCGTCCTGCTTGCCCAAAAGGCCCTCACGGACTACTTCCACTCCACCAGGTCCTTACCCTTCCTCTATGCCGAGCACATTGGCAGGAATTCATTTTATTCTTTATACGATCCCATTTCGAAGGTCGAGTTTTCCCTTTCCTCCTTCGCCAAGAGCTTTGAGAGGTTCCTCAGGTACCATCCCATCAACGAATTTGAGTTTTTCTTTGAAAGCATTGGGATAACCCAGAAAGAAATTTCTGGGTTTTTGCCTCCCAACAAATTCTTCTTTGCGGAGGATGGAAGGATCTTGAATGCGGCTGGTGCGCTTTCGGGTTTCGGGTTTCCATGGAACAAGCTCGGGATACTGTACAAGGCGGAGGCGTCGATTTTCGATAAGGATTCGGATGATTTATCTCGTAGGTTGTGTCGGTTTAAGGATTATGGGCTTAGTAATGTATCTGTTATTGGAATTTGTTTGGCTTTTCCGTTTGTTTTGGGTGGGAAGGGTGATTTAGGTGTTGAAGCTGGTGCATTGTTTGATGATTTGAAAAGGGTTTTTGTGGATTTTGATTTGGGGAGTTTTGTGGAGGAAAATGTGGATGCTTGGTATGAGATTTGCAGGAAAATTAGGCTATTTTATGATCTTGGTTGTGAGAAGGGTAAGATTGGAGAACTAATGGGGAGGAGTAGAAACATTTTTCTCGAGTACTCGGAAGAGGTTTTAGTTAGAAAGATGGATTTCTTTTGTAGGTTGAATGTTAGGAAGGCAGGTATTGGCTTGTTGCTTCTAGAGTGCCCAGAGATTCTGAGTTTTGATTTGGAGGCACCAGTAATTTCAGTGATGGGTTTTTTGAAACATTTTGGATTGGGGTTACAGAAGTCGAAGTCTGTTGCCCGAATGTATCCATATGTTTTGGGAAGAAATAAAATGGCTAATTTGCCTCATGTGATGAGAGCATTGGATCTTCATGAATGGTTTTTTGGTATGATGAAGAATGGGAATCATCGGCTGCTGGGTAATTATGTTTTGAGTCATCCTGATGAAGACTTGGATGAAGATTATAGAGTTGGCTTAGAGAAAATTCAATCGTCAAGAACCCCAGCTCACACAATTAATAAGCTGAACTTCTTGCATGGAATTGGGTATGGGGAGAATCTTTTGACCATGAAGGTCTTGGAACATGTGCATGGTACTAGCAGTGAGTTACAGGAGCGGTTCAATTGCCTTCTCCATGCAGGACTTGAATTCTCAAAGCTCTGCACAATGATAAGCTTTTCGGCAAAGATCCTAAACCAAAAGCCAGAAATTCTTGAAAGAAAAGTGAATTTTCTCATCCAGGAAATGGGGTTATCTTTGCAGTACCTTGATGTTTTCCCAGCATATTTGTGTTTTAACTTAGATAACAGGATTAAGCCTAGATATAGATGCCATGTGTGGCTTGCAGAAAATGATAACTTGTTTCAAAATCATTTCATATTTGAGATTATCACAAGATTAAGTGACCTGTCATCGAATATGGTGGATCTATTTCGGATCTCCACCAAGAGTAGCAGCTTTTATTTCCTCTGCTCCTGCTTCTCAGCCAATACGGGTATTGAATTTTAG 1704 0.4208 MPFLSTITITSLCTYLSRQLSSLPKNSNLSHIPSKHRSQAVLLAQKALTDYFHSTRSLPFLYAEHIGRNSFYSLYDPISKVEFSLSSFAKSFERFLRYHPINEFEFFFESIGITQKEISGFLPPNKFFFAEDGRILNAAGALSGFGFPWNKLGILYKAEASIFDKDSDDLSRRLCRFKDYGLSNVSVIGICLAFPFVLGGKGDLGVEAGALFDDLKRVFVDFDLGSFVEENVDAWYEICRKIRLFYDLGCEKGKIGELMGRSRNIFLEYSEEVLVRKMDFFCRLNVRKAGIGLLLLECPEILSFDLEAPVISVMGFLKHFGLGLQKSKSVARMYPYVLGRNKMANLPHVMRALDLHEWFFGMMKNGNHRLLGNYVLSHPDEDLDEDYRVGLEKIQSSRTPAHTINKLNFLHGIGYGENLLTMKVLEHVHGTSSELQERFNCLLHAGLEFSKLCTMISFSAKILNQKPEILERKVNFLIQEMGLSLQYLDVFPAYLCFNLDNRIKPRYRCHVWLAENDNLFQNHFIFEIITRLSDLSSNMVDLFRISTKSSSFYFLCSCFSANTGIEF* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0478 567 Gene3D Transcription termination factor 3, mitochondrial 230 360 IPR038538 -
Vvi15g0478 567 Gene3D Transcription termination factor 3, mitochondrial 389 532 IPR038538 -
Vvi15g0478 567 PANTHER CGI-12 PROTEIN-RELATED 58 539 IPR003690 GO:0003690|GO:0006355
Vvi15g0478 567 SMART mt_12 257 287 IPR003690 GO:0003690|GO:0006355
Vvi15g0478 567 SMART mt_12 292 323 IPR003690 GO:0003690|GO:0006355
Vvi15g0478 567 SMART mt_12 453 484 IPR003690 GO:0003690|GO:0006355
Vvi15g0478 567 SMART mt_12 485 517 IPR003690 GO:0003690|GO:0006355
Vvi15g0478 567 Pfam mTERF 240 346 IPR003690 GO:0003690|GO:0006355
Vvi15g0478 567 Pfam mTERF 428 508 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0478 Vvi-Chr15 12603621 12605594 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi15g0478 mTERF 3.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0478 - - vvi:100244389 1049.27