Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0476 ATGGTCGACAAGGACGACGACTTAGGCTTGAGTCTAGCCCTAAAATGCCCCGAAGCGCTGCCTCAGAGGCCTCTCAATCTCTTCGTGCAAAAGAAGGCCCTCTGCAGCGACGCGTTTCATGCATCTGAGACGAGAGCGTACCTGAGAGGCATCGATGTGAATCGGGCACCGACGATGGCGGATTGCGAGGATGTTGGGGTGTCGTCGCCAAACAGCACGATATCGAGCATAAGCGGGAAGAGGAATGACAGGGAAACCAACGAAGAAGAGAATGAGAACGAGAATGAGATTGAGAGTTCGGAGGAAGACGCCGGAGGCACCGGGGACACCGTCAGGAAGAAGCTCCGGTTGTCGAAAGAACAGTCGGCGATTCTCGAAGAGACTTTCAAAGAACACAACACTCTCAACCCGAAGCAAAAGTTGGCGCTAGCGAAGCAATTGAATCTGAGGCCGAGGCAGGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGAACTAAGTTGAAGCAGACGGAGGTGGACTGCGAGTATCTGAAGAGGTGCTGTGAGAATCTAACCGAGGAGAACAGACGGCTGCAGAAGGAGGTGCAGGAGCTGAGAACACTGAAGCTTTCACCACAGCTCTACATGCACATGAACCCTCCCACCACTCTCACCATGTGCCCATCGTGTGAGCGCGTGGCCGTCGCGTCCGCCTCATCCTCAGCACCCTCTCCATCACCCGCCTCCAACCCACTTGCTGCAGCCCCTCATTTCCCATTGGGCCCGCATCAACATCGGCCCATGCCCATAGCCGGGCCATGGGCCGGAGCAGCATCAATGCGCCACAGACCGTTCGATGCCCATGGCACCAGGTCGTGA 858 0.5606 MVDKDDDLGLSLALKCPEALPQRPLNLFVQKKALCSDAFHASETRAYLRGIDVNRAPTMADCEDVGVSSPNSTISSISGKRNDRETNEEENENENEIESSEEDAGGTGDTVRKKLRLSKEQSAILEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRTLKLSPQLYMHMNPPTTLTMCPSCERVAVASASSSAPSPSPASNPLAAAPHFPLGPHQHRPMPIAGPWAGAASMRHRPFDAHGTRS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0476 285 SUPERFAMILY Homeodomain-like 103 169 IPR009057 -
Vvi15g0476 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 37 241 - -
Vvi15g0476 285 Coils Coil 174 204 - -
Vvi15g0476 285 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677
Vvi15g0476 285 Pfam HD-ZIP protein N terminus 1 85 IPR006712 GO:0005634
Vvi15g0476 285 MobiDBLite consensus disorder prediction 231 285 - -
Vvi15g0476 285 MobiDBLite consensus disorder prediction 89 103 - -
Vvi15g0476 285 MobiDBLite consensus disorder prediction 61 111 - -
Vvi15g0476 285 Pfam Homeodomain 112 166 IPR001356 GO:0003677
Vvi15g0476 285 FunFam Homeobox-leucine zipper protein 18 95 173 - -
Vvi15g0476 285 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Vvi15g0476 285 Gene3D - 116 166 - -
Vvi15g0476 285 SMART HOX_1 110 172 IPR001356 GO:0003677
Vvi15g0476 285 MobiDBLite consensus disorder prediction 65 80 - -
Vvi15g0476 285 CDD homeodomain 112 169 IPR001356 GO:0003677
Vvi15g0476 285 Pfam Homeobox associated leucine zipper 168 201 IPR003106 GO:0006355|GO:0043565
Vvi15g0476 285 SMART halz 168 211 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0476 Vvi-Chr15 12566378 12567827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0476 21 277 Homeobox Transcription Factor Family AT3G60390 59.353 4.82e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi15g0476 HD-ZIP_N 2.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0476 K09338 - vvi:100264963 507.294