Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0473 ATGAATGCTGAGAAATTGGAGGACTGGGAGTTGGAAATGTGGGATGAGGAATTGTGTTGTGACCTTTCTCAGAGCAGCGGTGTCGGTGCAAATGCCAAAAGGGCTTTGGTAGGAGCAGGAGCTCGCGCTCTTTTTTACCCAACATTGCTGTATAATGTTGTTAGGAACAAGATTCAGCCTGAGTTTCATTGGTGGGATAGGGTTGATGAGGCTCACAGCATTGACCATTTGGTGATTCCCACAAGAGATTATCTCTTTGCTCCATCACTCAATGATACTTGCCGAGCTGTAGACTTCATCTATAGTAATGCATCTCTTGGGAGAATGACATATGTTCATTGCAAGGCTGGTCGGGGCCGCAGCACAACCATTGTTCTCTGTTACCTGGTGGAACACAAACAGATGACACCTGATGCTGCATACAACTATGTGAAATCCATCAGGCCAAGGGTGGTCCTAGCCTCGGCTCAGTGGAAGGCTGTTCAAGACTACTATCTGCAGAAAGTGAAGAAAACTAAAAGTTCTGGCTGCATTAACAACAGAGTCAGAAAGTCTCCATTCTTCCCATCAAAACAATATGGTGTAGCCTTTGATGATGACTCCATTGACATAGTAACAGAGTCAGATCTTGATGGATATGAGTCATATGGCACAAGCTGTGACTCTATAATCATGTTTGAAGAAGCCATGCTTTGGTTGCCAACACATCCTCTTCTACCCCAGCCTTATATTCCATACAGATATCTTTCAGCTTGTCGCACAGTTGGAAGCTTTTTTTCTCTGAAGAAGCCTATATTGCATTGCCGCTCAAGCTACAACCTGAAAGATTACAGAGAACAGAAAGGATGTGTATTGCCTTATGAGGAGAATTTGAGGCGGAGGCTTCTCATCTTCTTTTTGGTCTCATCAGGCTGTTTTCCAACTTTATCTTCTTCTGCAAAGACAAAGAGTAAGAACCCATATGACGAAAAACGGTTACTACAGCAAAACAAGCGAATACAAAAGGAAAATAATGCACCTGAAGACTTCCCAAATTTTGTTCGAGAAGGTTTTGAGGTTAAGGTGGTGACACCAGAGAACTACATAACAAGTGACTCAGGGCTTATATATCGAGATTTTGAAGTTGGTAAAGGTGATTGCCCAAAGGCTGGTCAACAGGTGACATTTCACTATGTTGGCTATAATGAGTCAGGTCGCCGTATTGACAGCAGTTATATGCAGGGTTCTCCTGCCAAAATCCGGATGGGCACCAATGCACTAGTTCCTGGATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCAGTGGGGCCTTCGACATTTTTCAGCTCAAAACAGTTTGAAGTGTTTGATGTGGAACTGCTCAACGTCAAAGACTGTCAAAGGAGGACGATAGGTTTCTATTCGGACGTTGTGTGTGAGTGA 1464 0.4365 MNAEKLEDWELEMWDEELCCDLSQSSGVGANAKRALVGAGARALFYPTLLYNVVRNKIQPEFHWWDRVDEAHSIDHLVIPTRDYLFAPSLNDTCRAVDFIYSNASLGRMTYVHCKAGRGRSTTIVLCYLVEHKQMTPDAAYNYVKSIRPRVVLASAQWKAVQDYYLQKVKKTKSSGCINNRVRKSPFFPSKQYGVAFDDDSIDIVTESDLDGYESYGTSCDSIIMFEEAMLWLPTHPLLPQPYIPYRYLSACRTVGSFFSLKKPILHCRSSYNLKDYREQKGCVLPYEENLRRRLLIFFLVSSGCFPTLSSSAKTKSKNPYDEKRLLQQNKRIQKENNAPEDFPNFVREGFEVKVVTPENYITSDSGLIYRDFEVGKGDCPKAGQQVTFHYVGYNESGRRIDSSYMQGSPAKIRMGTNALVPGFEEGIRDMKPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLNVKDCQRRTIGFYSDVVCE* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0473 487 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Vvi15g0473 487 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 381 446 IPR001179 GO:0003755
Vvi15g0473 487 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP20-2, CHLOROPLASTIC 214 487 IPR044239 -
Vvi15g0473 487 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 91 159 IPR000387 GO:0016311|GO:0016791
Vvi15g0473 487 FunFam Protein-tyrosine phosphatase 53 175 - -
Vvi15g0473 487 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 170 IPR020422 GO:0006470|GO:0008138
Vvi15g0473 487 Gene3D - 325 477 IPR046357 GO:0003755
Vvi15g0473 487 Gene3D Protein tyrosine phosphatase superfamily 49 172 IPR029021 -
Vvi15g0473 487 Pfam Dual specificity phosphatase, catalytic domain 67 164 IPR000340 GO:0008138|GO:0016311
Vvi15g0473 487 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 65 169 IPR029021 -
Vvi15g0473 487 SMART dsp_5 54 167 IPR020422 GO:0006470|GO:0008138
Vvi15g0473 487 SUPERFAMILY FKBP-like 307 471 - -
Vvi15g0473 487 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 384 471 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0473 Vvi-Chr15 12530972 12542720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0473 22 213 Protein tyrosine phosphatase (PTP) family AT2G35680 51.464 6.73e-71 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0473 - - vvi:100258093 536.184