Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0469 ATGAGTCGGAGGTTGAGGAGGAAGGTGGTGAAGAAGGGGAAGGAGAAGGTTGTTTTGCCAAGTTATCCTGAAATTGAGAATGATGATGGGGGCTTGGGCTTTGAAAATAAAGGATTTGCTAATTGGACTAGCTTGCCTGATGATACAGTGATTCAACTGTTTTCATGTTTGAATTATCGGGACCGGGCAAACTTGGCATCCACATGTAGGACATGGAGGCTTTTGGGTGCTTCACCATGTTTGTGGAACTCATTGGATCTCCGAGCTCATAGGTGTGATTCTGCTGCAGCAGCTTCACTTGCATCTCGGGGCATGAATCTTCAGAAGCTTCGGTTTCGTGGGCAAGAGACTGCTGATGCAATAATACATCTTCAAGCTAGGGGCTTGCGTGAAATCAGTGGGGATTACTGCAGGAAAATTAATGATGCTACTCTCTCTGTGATTGCGGCTCGGCATGAGCAGCTTGAGAGCCTCCAACTTGGACCAGATTTCTGTGAAAAGATCACCACTGATGCTATTAAAGCAATTGCTGTCTGCTGCCCTAAATTGAATAAACTTCGGCTTTCTGGTGTTAAGGATGTTCATGGAGATGCAATAGATGCTTTAGCTAAGCATTGCCGGAATTTGACTGATCTTGGGTTCATGGACTGTCTGAAGGTGGAGGAGTTGGCACTGGGGAATATATTATCACTTCGTTTCCTCTCAGTTGCTGGGACCACAAATCTGAAGTGGGGTTTGATTTCACACCTTTGGGGTAAACTACCTAACTTGACTGGGCTAGATGTTTCAAGGACGGATATAACTCCAAATGCTGCTTCAAGATTGTTCGCCTCATCACAGAGCTTGAAGGTCTTGTGTGCCTTGAATTGTTCAGCACTTGAACAAGATGTTACCTTTTTCGCCACTTATAACAATAATAACAATATTAATAATAAAGGTAAACTGTTACTTGCACAGTTTAGTGATATATTTAAGGGAATAGCTTCTTTATTTGCCGATACTTCGAAGAACAAGAGGGATGTATTTTTCGAATGGCGAAATGGGAAAAACAAGGATAAAAACTTGGATATGATCATGAATTGGCTTGAATGGGCTCTCTCCCATACACTCCTGCGTATTGCTGAGAGCAACCCACAAGGCTTGGATACATTTTGGCTTAAACAAGGTGCAGCACTATTGCTCAGTTTAATGCAGAGCTCACAAGAGGATGTTCAAGAGAAGGCAGCCACAGCACTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATTGATTGTGGAAGAGCTGAAGCAGTAATGAGGGATGGTGGCATACGTCTCCTTTTGAACCTTGCAAGATCTTGGCGGGAGGGGCTTCAGTCAGAAGCTGCAAAGGCTATTGCCAACTTGTCGGTGAATGCCAATGTTGCAAAAGCTGTTGCAGATGAAGGAGGAATCAATATACTTTCCAGTTTGGCTAGGTCCATGAACAGGTCAGTTGCCGAAGAGGCTGCTGGAGGACTCTGGAACCTTTCTGTTGGAGAAGAGCACAAGGGTGCAATAGCGGAAGCTGGTGGTGTAAAATCCTTGGTTGATCTTATTTTTAAATGGTCTGCTGGTGGTGATGGAGTTCTGGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAGGCTGCACGTGCCTTGGCTAATTTGGCTGCTCATGGAGATAGCAACAGCAACAATGCTGCTGTTGGACAAGAGGCAGGTGCACTTGAAGCACTTGTGCTACTTACGAAGTCTCCCCATGAAGGTGTCAGGCAAGAAGCTGCTGGTGCATTGTGGAATTTATCATTTGATGACAGAAACCGCGAAGCAATTGCAGCTGCTGGTGGCGTTGAGGCCCTGGTTGCTCTTGCACAATCCTGTTCAAATGCATCTCCAGGTCTTCAAGAGAGGGCTGCTGGTGCTCTTTGGGGATTGTCGGTATCAGAAGCCAATAGCATTGCTATTGGGCGAGAAGGGGGTGTTGCACCTCTTATTGCGCTGGCACGCTCTGATGCTGAAGACGTCCATGAGACTGCTGCAGGAGCTCTTTGGAATCTTGCCTTCAATCCTGGTAATGCTCTCCGCATAGTGGAAGAAGGGGGAGTGCCAGCCCTTGTCCATCTTTGTGCTTCCTCAGTATCAAAAATGGCACGCTTCATGGCTGCATTGGCACTTGCATACATGTTTGATGGAAGAATGGATGAGTTTGCACTGATAGGGACTTCTTCAGAAAGCACTTCAAAAAGTGTGAGCTTAGATGGGGCTAGAAGGATGGCTCTGAAGCACATTGAAACTTTCATCCTTACATTTTCTGATCCACAATCATTCTCCGCTGCTGCAGTATCCTCAGCTCCAGCAGCATTGGCACAAGTAACTGAATCAGCTAGGATTCAAGAAGCCGGACATCTGAGATGCAGTGGAGCTGAGATTGGGAGATTTGTTGCCATGCTACGAAATCCTTCTTCCATACTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAGTTCTCCATCCCTGGTGGTCGACATGCTGTGCACCATGCGACCCTTTTGCAGAGCGTGGGAGCAGCACGGGTTCTACGTGGTGCAGCTGCAGCAGCAACTGCCCCAATTGAAGCCAAAATCTTTGCAAGAATCGTCCTTCGCAACCTCGAGCACCACCAGATGGAACAGTCGATCTAA 2784 0.4655 MSRRLRRKVVKKGKEKVVLPSYPEIENDDGGLGFENKGFANWTSLPDDTVIQLFSCLNYRDRANLASTCRTWRLLGASPCLWNSLDLRAHRCDSAAAASLASRGMNLQKLRFRGQETADAIIHLQARGLREISGDYCRKINDATLSVIAARHEQLESLQLGPDFCEKITTDAIKAIAVCCPKLNKLRLSGVKDVHGDAIDALAKHCRNLTDLGFMDCLKVEELALGNILSLRFLSVAGTTNLKWGLISHLWGKLPNLTGLDVSRTDITPNAASRLFASSQSLKVLCALNCSALEQDVTFFATYNNNNNINNKGKLLLAQFSDIFKGIASLFADTSKNKRDVFFEWRNGKNKDKNLDMIMNWLEWALSHTLLRIAESNPQGLDTFWLKQGAALLLSLMQSSQEDVQEKAATALATFVVIDDENASIDCGRAEAVMRDGGIRLLLNLARSWREGLQSEAAKAIANLSVNANVAKAVADEGGINILSSLARSMNRSVAEEAAGGLWNLSVGEEHKGAIAEAGGVKSLVDLIFKWSAGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVLLTKSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSDAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCASSVSKMARFMAALALAYMFDGRMDEFALIGTSSESTSKSVSLDGARRMALKHIETFILTFSDPQSFSAAAVSSAPAALAQVTESARIQEAGHLRCSGAEIGRFVAMLRNPSSILKSCAAFALLQFSIPGGRHAVHHATLLQSVGAARVLRGAAAAATAPIEAKIFARIVLRNLEHHQMEQSI* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0469 927 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 563 594 IPR000225 GO:0005515
Vvi15g0469 927 Pfam Armadillo/beta-catenin-like repeat 509 551 IPR000225 GO:0005515
Vvi15g0469 927 Pfam Armadillo/beta-catenin-like repeat 685 722 IPR000225 GO:0005515
Vvi15g0469 927 Pfam Armadillo/beta-catenin-like repeat 562 593 IPR000225 GO:0005515
Vvi15g0469 927 Pfam Armadillo/beta-catenin-like repeat 601 637 IPR000225 GO:0005515
Vvi15g0469 927 Pfam Armadillo/beta-catenin-like repeat 472 506 IPR000225 GO:0005515
Vvi15g0469 927 Pfam Armadillo/beta-catenin-like repeat 639 681 IPR000225 GO:0005515
Vvi15g0469 927 Pfam Armadillo/beta-catenin-like repeat 431 465 IPR000225 GO:0005515
Vvi15g0469 927 PANTHER PROTEIN ARABIDILLO 1 1 924 - -
Vvi15g0469 927 Gene3D - 489 784 IPR011989 -
Vvi15g0469 927 FunFam Protein ARABIDILLO 2 364 511 - -
Vvi15g0469 927 SUPERFAMILY F-box domain 38 93 IPR036047 GO:0005515
Vvi15g0469 927 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 564 IPR000225 GO:0005515
Vvi15g0469 927 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 609 651 IPR000225 GO:0005515
Vvi15g0469 927 SUPERFAMILY ARM repeat 367 753 IPR016024 -
Vvi15g0469 927 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 650 695 IPR000225 GO:0005515
Vvi15g0469 927 SUPERFAMILY RNI-like 83 294 - -
Vvi15g0469 927 Gene3D Ribonuclease Inhibitor 35 312 IPR032675 -
Vvi15g0469 927 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Vvi15g0469 927 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Vvi15g0469 927 CDD F-box_AtADLO1-like 42 82 - -
Vvi15g0469 927 Pfam F-box-like 42 88 IPR001810 GO:0005515
Vvi15g0469 927 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Vvi15g0469 927 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 694 736 IPR000225 GO:0005515
Vvi15g0469 927 SMART arm_5 683 723 IPR000225 GO:0005515
Vvi15g0469 927 SMART arm_5 508 551 IPR000225 GO:0005515
Vvi15g0469 927 SMART arm_5 426 466 IPR000225 GO:0005515
Vvi15g0469 927 SMART arm_5 467 507 IPR000225 GO:0005515
Vvi15g0469 927 SMART arm_5 598 638 IPR000225 GO:0005515
Vvi15g0469 927 SMART arm_5 639 682 IPR000225 GO:0005515
Vvi15g0469 927 SMART arm_5 724 765 IPR000225 GO:0005515
Vvi15g0469 927 SMART arm_5 552 593 IPR000225 GO:0005515
Vvi15g0469 927 SMART fbox_2 45 85 IPR001810 GO:0005515
Vvi15g0469 927 Gene3D - 351 488 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0469 Vvi-Chr15 12459861 12480775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0469 642 876 U-box Gene Family AT2G23140 28.511 9.66e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0469 - - vvi:100263231 1716.44