Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0463 ATGGACCAACTGTACGGTCTTTACTCTCCCTCCTCCTCCGATTACCATCACCCGCCTCCATTTCCGCCGAAAAATCTGATTTCTCCATCTCATTACCCGAATTTTAATTCTCCTGCGCCATTTCCGATCTTTGGATTCGACCAGCTGTTGTCGGCGTCGTCTGTGGCGGTCTCTGATGCAACTTCCATGGTGGCTCAAATTCAAGGAGGAGGTTCTGGAGATGAGGTTTCCAGTGCTATTCGAACCCAAATCGCTACTCATCCTCTCTATCCTAAACTTCTCCATGCTTACATCGAGTGCCAGAAGGTCGGAGCGCCACCGGAGGTGGCGTATCTGTTGGAAGAAATCAGGAGAGGAAGCGAGCTTTGTAGAAGAAACACCGTTTCCACTTGCTTGGGTGCGGATCCCGAGCTGGATGAGTTCATGGAAACCTACTGCAATGTACTAATGAAATATAAATCGGATCTCGCCAGGCCTTTCGATGAAGCCACCGCGTTTCTGAACAACATAGAGACGCAGCTCAATACTCTCTGCAATGGTGCTTCCCGAAGCTACGTTTCCGACGAAGTAGCTAGGTCATTAGAGGAAGGCTTAGAGGAAGTAGAGGGTGGGAAGTTGAAGACATGGAGGAGTACAAGGAGTGTGGCCTTCACAAATGAAATACTAAGCAAGAAGAGGTGTCTGAACTAA 690 0.4884 MDQLYGLYSPSSSDYHHPPPFPPKNLISPSHYPNFNSPAPFPIFGFDQLLSASSVAVSDATSMVAQIQGGGSGDEVSSAIRTQIATHPLYPKLLHAYIECQKVGAPPEVAYLLEEIRRGSELCRRNTVSTCLGADPELDEFMETYCNVLMKYKSDLARPFDEATAFLNNIETQLNTLCNGASRSYVSDEVARSLEEGLEEVEGGKLKTWRSTRSVAFTNEILSKKRCLN* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0463 229 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Vvi15g0463 229 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Vvi15g0463 229 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 75 180 - -
Vvi15g0463 229 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Vvi15g0463 229 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0463 Vvi-Chr15 12372334 12373023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0463 1 196 Homeobox Transcription Factor Family AT1G23380 48.077 8.30e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0463 - - vvi:100253023 442.965