Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0455 ATGGATGAGAAGTCGATTGCCCTCGACGAGGCTATAAACAAGGAAGCTGTTGATCTGGAGAATATACCCCTTGAAGAAGTTTTTGAACATCTTAAATGTACTAGAGAGGGTCTCAGCCATGAAGCGTTTCAACAACGGTTGGATCTGTTTGGGTACAATAAACTTGAAGAAATAAAGGAAAACAAAATACTGAAGTTTTTGGGATTTATGTGGAATCCTCTGTCATGGGTCATGGAAGCAGCAGCTGTAATGGCTATTGCTCTTGCACATGGAGGAGGCAAGCCTACAGATTATCATGATTTTGTTGGGATCATCATCTTACTTATTGTCAATTCTACAATCAGTTTCGTAGAGGAAAACAATGCAGGAAATGCAGCAGCTGCTCTTATGGCTCGGTTGGCCCCAAAAGCAAAGGTCTTACGTGATGGGAAATGGAGTGAGGAAGATGCAGCAGTGTTGGTTCCTGGAGACATAATCAGTATCAAACTTGGGGACATCATTCCTGCAGATGCACGTCTTCTTGAAGGAGATCCCCTAAAGATTGATCAGTCTGCCCTAACTGGAGAATCGCTTCCTGTAACCAAGAATCCTGGTGATGGAGTCTACTCAGGTTCAACATGTAAGCAAGGTGAAATTGAAGCAGTAGTTATTGCAACTGGAGTTCATACTTTCTTTGGGAAGGCAGCCCACCTTGTGGAAACCACTACACATGTTGGCCATTTTCAAAAGGTTTTAACAGCAATCGGAAACTTCTGCATTTGCTCAATTGCTTTTGGGATGGCTATTGAAATCGTAGTGATATATGGGCTTCAGGAGAGGGAATATCGTGTTGGTATCGATAACCTGCTTGTTCTACTGATTGGTGGGATCCCAATTGCAATGCCAACTGTTCTTTCTGTTACAATGGCTATAGGTTCTCATCGGTTATCTCAGCAGGGTGCTATAACGAAGCGAATGACTGCCATTGAGGAAATGGCTGGAATGGATGTGCTATGCAGTGACAAAACAGGCACCTTGACACTTAACAAACTCACTGTGGACAAGAATATGATCGAGGTTTTTGCCAAAGGGGTTGACAAGGATATGGTTGTACTCATGGCTGCAAGGGCATCAAGATTAGAAAACCAAGATGCCATTGATGCCGCAATTGTTTCAATGTTAGCAGACCCTAAAGAGGCACGAGCTGGGATAACGGAAATTCACTTCCTCCCATTCAATCCAACCGATAAAAGGACGGCGCTTACATACATAGATGGTGCTGGTAAAATGCATAGAGTGAGCAAAGGTGCACCAGAGCAGATTCTCAATCTAGCTCATAACAAATCAGAAATTGAGAGGAAGGTACATTCAATAATTGACAAGTTTGCAGAACGTGGCCTTCGATCCCTAGGTGTTGCCCGCCAGGAAGTACCTGCTGGAAACAAAGAGAGTTCTGGTGCCCCATGGGAATTTGTTGGTCTCCTCCCTCTCTTTGATCCTCCTCGCCATGATAGTGCTGAAACAATAAGAAGAGCACTTGATCTTGGAGTTAGTGTCAAAATGATCACAGGTGACCAACTGGCAATTGGTAAGGAAACAGGAAGACGACTTGGAATGGGCACAAACATGTATCCCTCTTCATCTTTGCTTGGTGAAAATAAGGATGAGGCAGTTTCAGCTCTACCAATTGATGACCTCATTGAGAAAGCTGATGGTTTTGCTGGGGTTTTTCCTGAACATAAATATGAGATTGTAAAGAGATTACAAGCAAGAAATCACATCTGTGGAATGACTGGGGATGGAGTAAATGATGCACCTGCATTAAAGAAAGCTGATATAGGAATTGCTGTAGCAGATTCCACTGATGCTGCTCGTGGTGCTTCTGATATAGTTCTAACAGAGCCTGGTTTGAGTGTCATCATCAGTGCCGTCTTAACAAGCCGCGCAATCTTCCAGCGGATGAAAAACTACACGATATATGCTGTCTCTATTACCATACGTATTGTGCTAGGTTTTATGTTGCTGACTTGCTTCTGGGAATTTGACTTCCCTCCTTTTATGGTTCTCGTCATTGCCATTCTTAATGATGGTACCATAATGACAATATCCAAAGACAGGGTCAAGCCTTCTCCACTTCCTGATAGTTGGAAGCTCACTGAAATTTTTACAACTGGGGTTGTTCTTGGAGCTTACCTGGCCCTAATGACAGTTTTTTTCTTCTATGTAACCTATGAAACTAACTTCTTTACGAAACGTTTCGATGTACCTGACTTCAATCAGCACCACTTTAACATGACAAATGAAACCATAGCTATTGAGCTTAAAGAACAGTTGGCATCTGCTGTTTATCTTCAAGTCAGCACCATCAGCCAGGCCTTGATATTTGTCACTCGCTCTAGGAACTGGTCATTCACAGAACGACCTGGACTTCTGCTCGTAACAGCCTTTATTATTGCTCAACTGATTGCTACTGTGATATCTGCTACTGCAACCTGGAAATTTGCGGGAATTAGAAAGATTGGGTGGGGTTGGACTGCTATCATTTGGGTGTATAATATTCTGACTTACCTTTTGCTTGATCCAATCAAGTTTGCTGTCCGGTATGCCCTCAGCGGACGAGCCTGGGGTCTGGTGGTAAACCAAAGGACCGCATTCACAAACCAGAAGGACTTTGGCAAGGAAGCCCGTGAGGCTAAATGGGCTGCTGAGCAGCGAACGCTGCATGGCCTACAGTCTGCTGAGATGGCAAGCATGTTCTCGCAGCGCGGCACTTTTAGGGACATTAACCTTATGGCAGAAGAAGCAAGAAGGAGGGCTGAAATCTCAAGGTTGAGAGAGCTTCGCACTCTGAAAGGAAGGGTTGAGTCCTTTGCCAAGCTGAGGGGTCTAGACATTGATTCCAACATCAATCCGCACTACACTGTCTAA 2907 0.44 MDEKSIALDEAINKEAVDLENIPLEEVFEHLKCTREGLSHEAFQQRLDLFGYNKLEEIKENKILKFLGFMWNPLSWVMEAAAVMAIALAHGGGKPTDYHDFVGIIILLIVNSTISFVEENNAGNAAAALMARLAPKAKVLRDGKWSEEDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVETTTHVGHFQKVLTAIGNFCICSIAFGMAIEIVVIYGLQEREYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNMIEVFAKGVDKDMVVLMAARASRLENQDAIDAAIVSMLADPKEARAGITEIHFLPFNPTDKRTALTYIDGAGKMHRVSKGAPEQILNLAHNKSEIERKVHSIIDKFAERGLRSLGVARQEVPAGNKESSGAPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDEAVSALPIDDLIEKADGFAGVFPEHKYEIVKRLQARNHICGMTGDGVNDAPALKKADIGIAVADSTDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTCFWEFDFPPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLTEIFTTGVVLGAYLALMTVFFFYVTYETNFFTKRFDVPDFNQHHFNMTNETIAIELKEQLASAVYLQVSTISQALIFVTRSRNWSFTERPGLLLVTAFIIAQLIATVISATATWKFAGIRKIGWGWTAIIWVYNILTYLLLDPIKFAVRYALSGRAWGLVVNQRTAFTNQKDFGKEAREAKWAAEQRTLHGLQSAEMASMFSQRGTFRDINLMAEEARRRAEISRLRELRTLKGRVESFAKLRGLDIDSNINPHYTV* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0455 968 Pfam E1-E2 ATPase 133 311 - -
Vvi15g0455 968 FunFam Plasma membrane ATPase 484 639 - -
Vvi15g0455 968 PANTHER CALCIUM-TRANSPORTING ATPASE 20 899 - -
Vvi15g0455 968 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Vvi15g0455 968 SUPERFAMILY HAD-like 328 638 IPR036412 -
Vvi15g0455 968 Gene3D - 97 831 - -
Vvi15g0455 968 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Vvi15g0455 968 Gene3D - 344 491 IPR023299 GO:0000166
Vvi15g0455 968 CDD P-type_ATPase_H 37 857 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vvi15g0455 968 Gene3D - 916 968 - -
Vvi15g0455 968 Gene3D - 135 219 - -
Vvi15g0455 968 PRINTS H+-transporting ATPase (proton pump) signature 776 797 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0455 968 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0455 968 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0455 968 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0455 968 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0455 968 SFLD p-type atpase 314 642 IPR044492 -
Vvi15g0455 968 FunFam Plasma membrane ATPase 344 491 - -
Vvi15g0455 968 NCBIfam plasma-membrane proton-efflux P-type ATPase 37 821 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vvi15g0455 968 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Vvi15g0455 968 NCBIfam HAD-IC family P-type ATPase 104 352 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0455 968 NCBIfam HAD-IC family P-type ATPase 566 670 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0455 968 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 863 IPR023298 -
Vvi15g0455 968 FunFam Plasma membrane ATPase 135 219 - -
Vvi15g0455 968 Gene3D - 329 628 IPR023214 -
Vvi15g0455 968 SFLD C1.7: P-type atpase like 314 642 - -
Vvi15g0455 968 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Vvi15g0455 968 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Vvi15g0455 968 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Vvi15g0455 968 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Vvi15g0455 968 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Vvi15g0455 968 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Vvi15g0455 968 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Vvi15g0455 968 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0455 Vvi-Chr15 12288192 12296600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0455 10 968 Primary Pumps ATPases AT3G60330 79.562 0.0 1568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0455 K01535 - vvi:100246249 1853.95