Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0452 ATGTACGAATACACCACGTTGGAGTCCGATCTGGCTTTTCTTGAATCCATTAGCAACCATCTTCTCGAAGATTCCGAACTCCTGGCGCCGATCTCCGGCAATGTTCCTGGGTATTGCTCTGCTCCTTCCTTCACTGGATTATTTTCTTCTCAAATTTGGGGGAATTCTCCGGTGGTGGATTCTGCGGCCGCCAGTGGAGTTGTGGAGGTAAAGGCGGAGGTTGAGGAGGAGGCGCCGAGAGGGGGTGTGGCGAAGGAGGAGGAGGGGAGGCGGTACAGGGGAGTGAGGCGGAGGCCGTGGGGGAAGTACGCGGCGGAGATCAGGGATCCGGCGAAGAACGGCTCAAGAGTGTGGCTGGGGACGTATGAGACGGCGGAGGACGCCGCTCTGGCTTACGACCAAGCCGCTTACAGGATGCGCGGCTCTCGCGCGCTCCTGAATTTTCCTCTTCGGATTGGGTCTGGGGAGCCGGAGCCCGTGAGAATCACCGCCAAGCGCCGCTCTTCGCAGCGGTCATTATCGGAGGCGGTGGCGGCACCCTCTCTGAAGCGTGGAAAGGGAGTGGATTCGACGGCTAAAGTGGAGGCGGCTGAAGCAAGCGTAGTAGAAATGTTCCAAGCCAATCAACGATGGGTGAAATCATAA 645 0.5829 MYEYTTLESDLAFLESISNHLLEDSELLAPISGNVPGYCSAPSFTGLFSSQIWGNSPVVDSAAASGVVEVKAEVEEEAPRGGVAKEEEGRRYRGVRRRPWGKYAAEIRDPAKNGSRVWLGTYETAEDAALAYDQAAYRMRGSRALLNFPLRIGSGEPEPVRITAKRRSSQRSLSEAVAAPSLKRGKGVDSTAKVEAAEASVVEMFQANQRWVKS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0452 214 PANTHER DNA-BINDING DOMAIN 79 183 IPR044808 GO:0003700|GO:0009873
Vvi15g0452 214 Pfam AP2 domain 91 141 IPR001471 GO:0003700|GO:0006355
Vvi15g0452 214 Gene3D AP2/ERF domain 90 152 IPR036955 GO:0003700|GO:0006355
Vvi15g0452 214 CDD AP2 99 149 IPR001471 GO:0003700|GO:0006355
Vvi15g0452 214 ProSiteProfiles AP2/ERF domain profile. 91 149 IPR001471 GO:0003700|GO:0006355
Vvi15g0452 214 FunFam Ethylene-responsive transcription factor 2 90 150 - -
Vvi15g0452 214 SUPERFAMILY DNA-binding domain 91 151 IPR016177 GO:0003677
Vvi15g0452 214 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Vvi15g0452 214 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Vvi15g0452 214 SMART rav1_2 91 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0452 Vvi-Chr15 12247661 12248305 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0452 1 166 AP2-EREBP Transcription Factor Family AT5G47220 48.187 9.41e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi15g0452 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0452 K09286 - vvi:100259767 382.104