Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0448 ATGTACGGCCACACCACTTTCGACTCTGATGTCGCTTTTCTTGAATCCGTTCGCAGTTATCTTCTTGAGGATTCCGTCCTTCCTCACCCATTCTCTGCCAATGCTCCGGCGTATTCCGCCACTACTCCCACCTTCACTGAAAACAGGGAGAATCAGCCGGTATTGGATGCTGCTGCCGCCAGTGGAGTCGTAGGGGAGGCGAAGGCAGAGCCCCAGGAGGCCGCGGGGCCGGAGAAGTTGAGGAGGTACAGAGGAGTACGGCGTAGGCCGTGGGGGAAATACGCGGCGGAGATAAGGGATCCGGCGAAGAACGGCGCCAGAGTGTGGCTGGGGACCTACGAGACTGCGGAGGACGCTGCGCTGGCTTACGACCGAGCCGCCTTCCGGATACGCGGCTCTCGCGCGATCCTCAATTTTCCTCTGCGGATTGGGTCTGGCGATCCAGAGCCGGTGAGAATCACCACCAAGCGCCGCTCTCCGCAGCCGTCATTGTCGGCCGCGGCGGCAGCAGCCCTCAAGCGTACAAAGGGCGACGTGGAATCGACGGCTGAAATGGAGGCGGCTACAGAAAATGTAGAAGATGTGTTCCAATTGCATCAACTATGGGTGAACTCGTAG 618 0.5939 MYGHTTFDSDVAFLESVRSYLLEDSVLPHPFSANAPAYSATTPTFTENRENQPVLDAAAASGVVGEAKAEPQEAAGPEKLRRYRGVRRRPWGKYAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAFRIRGSRAILNFPLRIGSGDPEPVRITTKRRSPQPSLSAAAAAALKRTKGDVESTAEMEAATENVEDVFQLHQLWVNS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0448 205 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Vvi15g0448 205 FunFam Ethylene-responsive transcription factor 2 81 141 - -
Vvi15g0448 205 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Vvi15g0448 205 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Vvi15g0448 205 Gene3D AP2/ERF domain 81 143 IPR036955 GO:0003700|GO:0006355
Vvi15g0448 205 PANTHER DNA-BINDING DOMAIN 53 175 IPR044808 GO:0003700|GO:0009873
Vvi15g0448 205 SUPERFAMILY DNA-binding domain 82 142 IPR016177 GO:0003677
Vvi15g0448 205 CDD AP2 90 140 IPR001471 GO:0003700|GO:0006355
Vvi15g0448 205 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vvi15g0448 205 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0448 Vvi-Chr15 12230432 12231049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0448 1 157 AP2-EREBP Transcription Factor Family AT5G47220 46.193 2.27e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi15g0448 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0448 K09286 - vvi:100253112 373.244