Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0443 ATGGAAAGAATTCCAGAGTCAAAGAAAACGCTTCCTGGGCAATTGCCAATTGTGGGTCTGGTAGCAAAACAACACATGGCTTTGCTAAGGCAAGAAGTCGGTCGGCCTGATGCACGGGATTCTCAAGATTCAGACTCTTCTCCTGCACCAATAAGGACGTGGAAAGGAAAGGATTCTTTACTTGAGCAAGAGGAGTCGATGCCTGATGTTGTTAAGGGCAGTAGTGATTCATTTGAGGAAGGTGGCCCTAGCTCTTTCTCTGGGGCTAGTCATCCCCCAGAACCCGTAGATACAGATCCGATGAGAACAGTGTATGTACCAATTGGTCAGAAGAAGTCTGAGGGTGGTTGCTTGATGAAAAGCTTATCTATGAAGGGTCCTTTTTTAGAGGATCTATCAATCCGTGTTTCAGGTATAAAACCAAGCCCATCTGTTCTTTCACCTGCAGAAAGCTTGGTTGAAGAACCTAATGATTTGGGTGCTTTGTCTTCTCCATTTTCGATTCCTCGTGCATCACAAAATACTGAAAACTCTCTCCTTCCTCCTGATTCTGAAGAAAAGGAATGTGTTTGGGATGCTTCTTTGCCTCCAAGTGGCAATGTAAGTCCACACAGTAGCATTGATAGCACTGGTGTTGTCACAGCCATGAGCATTGTCAATAGCTGTGCCAGTACATACAGGAGTGATGCAATGACAAGTGATGGCATGCTTAGTGTGGAGAGGAACTGTGAGAGTACAAAGGGAAGTGTAAGAGGGGATTCACTTGAGAGTGCAAAAACTAGCATTAGCCGTGCAAGCGATAGCAGTGGCCTTAGTGATGATAGTAATTGGAGTAACATTACTGGTAGTGCTAATAAGCCACACAAAGGAAATGATCCTAGATGGAAGGCCATTCTTGCCATCCGTGCACGAGATGGCATTTTGGGTATGAGTCATTTTAGGTTGCTCAGACGGCTTGGGTGTGGTGATATTGGCAGTGTGTATCTCTCGGAGTTGAGTGGTACACGCTGTTACTTTGCAATGAAAGTAATGGATAAGGCATCTCTTGCAAGCCGAAAAAAATTGACCAGAGCTCAGACAGAAAGAGAGATTCTGCAGCTACTAGACCATCCATTCCTACCAACTCTTTACACTCATTTTGAGACAGACAGATTCTCATGTTTGGTCATGGAATTTTGTCCGGGAGGTGATCTTCACACTCTAAGGCAACGACAACCTGGGAAACATTTCTCTGAGTATGCTGCCCGGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGATGGCCACATAATGCTCTCAGATTTTGACCTTTCCCTAAGATGTGCAGTTTCACCCACCCTTATTAAAACCTCCTCATTTGATTCTGACCCCTCCAAACGGGGAACTGGTGGTGCATTCTGTGTCCAGCCTGCCTGTATTGAACCCTCATCAGTATGCATCCAGCCAGCATGTTTTATTCCCCGGATCTTTCCCCAGAAGAATAGTAAGAAAAAAACTAGAAGACCACGAGCTGAGCCTGGGCTGCCTGCCAGTACATTGCCTGAGCTTGTGGCAGAGCCTACTGCAGCTCGGTCCATGTCCTTTGTTGGGACCCATGAATACCTTGCTCCTGAAATCATCAAGGGAGAAGGGCATGGCAGTGCAGTTGATTGGTGGACATTTGGTATCTTCTTGCATGAACTACTGTATGGTAAAACCCCTTTCAAGGGTTCAGGAAACCGGGCTACCCTTTTCAATGTGGTGGGGCAACAGCTCAGATTTCCTGATGCACCAGCGACTAGTTATGCAAGTCGGGATCTAATCCGGGGATTACTGGTGAAGGAGCCACAGCACAGACTGGGTGTGAAGAGGGGAGCAACTGAGATAAAGCAGCACCCCTTCTTTGAAGGCGTGAATTGGGCTCTGATACGATGCAGCACGCCGCCAGAGATTCCAAGACCAGTGGAAACAGAGCTACCAGGAAAGTTTGGGACAGTTGACACTGTTGGGGTCGGGATCGGCAGCAGTAGTAAGAGGATGGTAGGGGCAGACATGAAGTCTGGGGGTAAATATCTCGACTTTGAGTTCTTCTAG 2139 0.467 MERIPESKKTLPGQLPIVGLVAKQHMALLRQEVGRPDARDSQDSDSSPAPIRTWKGKDSLLEQEESMPDVVKGSSDSFEEGGPSSFSGASHPPEPVDTDPMRTVYVPIGQKKSEGGCLMKSLSMKGPFLEDLSIRVSGIKPSPSVLSPAESLVEEPNDLGALSSPFSIPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDAMTSDGMLSVERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLRRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEFCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSFDSDPSKRGTGGAFCVQPACIEPSSVCIQPACFIPRIFPQKNSKKKTRRPRAEPGLPASTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDAPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEIPRPVETELPGKFGTVDTVGVGIGSSSKRMVGADMKSGGKYLDFEFF* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0443 712 Gene3D Phosphorylase Kinase; domain 1 311 396 - -
Vvi15g0443 712 Gene3D Transferase(Phosphotransferase) domain 1 397 472 - -
Vvi15g0443 712 MobiDBLite consensus disorder prediction 242 286 - -
Vvi15g0443 712 FunFam serine/threonine-protein kinase D6PK-like 397 464 - -
Vvi15g0443 712 MobiDBLite consensus disorder prediction 166 180 - -
Vvi15g0443 712 FunFam Serine/threonine-protein kinase D6PK-like 311 396 - -
Vvi15g0443 712 SUPERFAMILY Protein kinase-like (PK-like) 295 671 IPR011009 -
Vvi15g0443 712 FunFam serine/threonine-protein kinase D6PK-like 545 668 - -
Vvi15g0443 712 CDD STKc_phototropin_like 311 669 - -
Vvi15g0443 712 MobiDBLite consensus disorder prediction 157 206 - -
Vvi15g0443 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Vvi15g0443 712 PANTHER FLIPPASE KINASE 1-RELATED 53 672 - -
Vvi15g0443 712 MobiDBLite consensus disorder prediction 31 101 - -
Vvi15g0443 712 MobiDBLite consensus disorder prediction 242 290 - -
Vvi15g0443 712 Gene3D Transferase(Phosphotransferase) domain 1 546 667 - -
Vvi15g0443 712 SMART serkin_6 313 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0443 712 ProSiteProfiles Protein kinase domain profile. 313 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0443 712 Pfam Protein kinase domain 314 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0443 712 Pfam Protein kinase domain 547 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0443 Vvi-Chr15 12132057 12138792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0443 37 712 AGC Kinase Gene Family AT2G44830 72.767 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi15g0443 Pkinase 4.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0443 - - vvi:100244501 1422.14