Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0426 ATGGATCATCATCATCATCAAGGAGAAAGATCTGGGGTTCCAAATTATGAGCTTCAGGTGTCTTATTCTACTACTCCTCAAGGCATCCATGAAATGGGGTTTGTGCAGTTTGAGGAGAACCAGGTGCTGAGTTTCTTGGCACCATCACAGTCTGCTCAGATGTCTCAGCCTCTCAACACTGCTAGCACATCCACACCCACACCCACACCCACCAACACCACTACTAATACAACCATGGGCTTTACTCACAATGATCTTCTCACCAGACCTTCTTGGAATAATGAGCAGGTGGGGACATTGGATCCGAAGGCTGTGAATGAAGAGAATTGCACTGGTAATGCCAACGATGGAAGCAATTCATGGTGGAGGAGCTCATCCTCAGAAAAGACCAAAGTGAAGGCGAGGAGAAAGCTTAGAGAGCCAAGGTTCTGTTTTCAAACTAGAAGCGAGGTGGATGTGCTCGACGATGGTTACAAATGGAGAAAATATGGCCAGAAAGTCGTCAAGAATAGCCTTCATCCAAGAAGTTATTATCGTTGTACTCATACAAACTGTCGAGTGAAGAAGAGGGTGGAGCGGTTATCAGAAGATTGTCGGATGGTGATAACAACATATGAAGGTAGACACAACCACTCTCCTTGTGACGACTCCAATTCATCTGAACACGAATGTTTCACTTCATTCTGA 687 0.4527 MDHHHHQGERSGVPNYELQVSYSTTPQGIHEMGFVQFEENQVLSFLAPSQSAQMSQPLNTASTSTPTPTPTNTTTNTTMGFTHNDLLTRPSWNNEQVGTLDPKAVNEENCTGNANDGSNSWWRSSSSEKTKVKARRKLREPRFCFQTRSEVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0426 228 MobiDBLite consensus disorder prediction 53 79 - -
Vvi15g0426 228 SUPERFAMILY WRKY DNA-binding domain 146 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g0426 228 ProSiteProfiles WRKY domain profile. 149 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g0426 228 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g0426 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 215 IPR044810 GO:0003700
Vvi15g0426 228 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g0426 228 FunFam WRKY transcription factor 57 140 214 - -
Vvi15g0426 228 Gene3D WRKY domain 140 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0426 Vvi-Chr15 11499221 11504641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0426 8 228 WRKY Transcription Factor Family AT2G44745 57.642 2.61e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi15g0426 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0426 - - vvi:100254670 436.802