Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0418 ATGGCCAGTACGACGTCGCCCGCGCAGGACGCATCTCTGCCTCCGCCCCAGCAACAGCCCTCTCCCGCGCCACCCTCCTCCCGGCGGCTCCCACCGCCGTGCTGGTCCCACGACGAGACCGTGGCTTTGATCGATTCGTATCGGGACAAGTGGTACGCCCTCCGCCGTGGGAATCTCAGGGCCAACCACTGGCAGGAGGTCGCCGACGCCGTCTCGCGGCGGTGCCCGCTCTCCAGTCCGCCCAAGACTTCCGTACAGTGCCGCCACAAGATGGAGAAGCTCCGGAAACGCTACCGGACGGAGTTGCAGCGGTCGATGAACGCGCCGAGTCACCGGTTCAACTCGTCTTGGGTTCACTTCAAGAGGATGGATGCCATGGAGAAGGGGCCGTCCTCCACCGCCGCCGTCGAATCGGGCTCTGATGGTGACGACGATGACGACGACGATGATCAGGATTTGTATGAAGATGGTGGTCTCAAACGTGGCATTGGTAATACTCGGAGCCTCCAGGGTTTGATGAGTAACGGAATCGGCAGTGGCGGCGGACCCGGTGCCGGGTTTCGAATTCGAATCCCTGGTCGCGGGAATTTGGACTCGCCGCCTATGGCGAAGATTTATGGAAATTTTGATCAAAACCCTAACCCTAGCCCTAATTTTGGGTCCAGGGTTTTGGGGGATAACGATCGGGCGAGGCCAGCCATGGGCAAGAGAAGCGGTGGTGGTGGTGGAGACCCGGTGGCTGAGATGGTGGCAGCGATAAAGATGTTAGGAGATGGGTTTGCGAAAATGGAGCAGAAGAAGATGGACATGGCCCGGGAGGTCGAGGCAATGCGCATGGACATGGAGATGAAGCGGACGGAGATGATTCTGGAGTCCCAACAGCGGATTGTGGAGGCATTTGCCAATGCATTATCAGAGAAGAAGAAGAAGCCTAAGAAAATGACCTCATCGCCGGAGTATTAG 963 0.5867 MASTTSPAQDASLPPPQQQPSPAPPSSRRLPPPCWSHDETVALIDSYRDKWYALRRGNLRANHWQEVADAVSRRCPLSSPPKTSVQCRHKMEKLRKRYRTELQRSMNAPSHRFNSSWVHFKRMDAMEKGPSSTAAVESGSDGDDDDDDDDQDLYEDGGLKRGIGNTRSLQGLMSNGIGSGGGPGAGFRIRIPGRGNLDSPPMAKIYGNFDQNPNPSPNFGSRVLGDNDRARPAMGKRSGGGGGDPVAEMVAAIKMLGDGFAKMEQKKMDMAREVEAMRMDMEMKRTEMILESQQRIVEAFANALSEKKKKPKKMTSSPEY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0418 320 Pfam Myb/SANT-like DNA-binding domain 33 126 IPR044822 -
Vvi15g0418 320 SMART 118neu2 42 131 IPR006578 -
Vvi15g0418 320 MobiDBLite consensus disorder prediction 128 196 - -
Vvi15g0418 320 MobiDBLite consensus disorder prediction 210 245 - -
Vvi15g0418 320 FunFam Trihelix transcription factor ASIL2 35 100 - -
Vvi15g0418 320 MobiDBLite consensus disorder prediction 139 153 - -
Vvi15g0418 320 MobiDBLite consensus disorder prediction 1 34 - -
Vvi15g0418 320 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 19 306 IPR044823 -
Vvi15g0418 320 Gene3D - 35 100 - -
Vvi15g0418 320 MobiDBLite consensus disorder prediction 13 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0418 Vvi-Chr15 11288753 11289715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0418 34 136 Trihelix Transcription Factor Family AT3G14180 36.449 1.84e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi15g0418 Myb_DNA-bind_4 8.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0418 - - vvi:100263384 541.191