Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0414 ATGCCTCCCAGAGCGGTAAAGAAAACCGCGGCGGCCACGAAGCGGACGCCGAGAGCCACAAGGGGGACTCCTAAGGTCCAACCCCAGCCAGAAGCCTCGGTAGAGCCGGTCAAAGCAGAGGAAGTTTCGGTTCCTGTTGTTGAGGTCAAGGAAGAAGTTAAGGTTGCGGAGGCTGTTGAAGTAAAGGTCGTAGAAAAGGCTCCAGAACCTGAGCCGGTGCCGGAACCTGAACCTGAGCCGGAACCTGAACCGGAACCGGAATCGAAGGCCGAACCTGAACAGGAATCGAATACAAATAGATTGTCTCCCGTGAAGAAGGAAGATGAGATAAAGGAGTCTGTTGACGAATATGAGAAAAATGAATATGAAAAAGATGAGCGGCTGGATCTGGAAGATAATGAACCTGAATATGAAACTGAAGAATATGGTGGGGTTGATTATGATGAGAAGGAAATCGAACAAGAGGACATTCCTGATGGGGGAGATGAAGTGGAGGAGGAAAATGAGGAGGGGGATGTTGGTGAGGAGGAAGATGGTGATGTAGGTGAAGAAGGAATGGAAGATGTTCCTGAAGAACTTGAGGGTGAAGAGGATGATGAACATGCTGGTGAATTGCAGGAGCATGCAGAGATGGTTGATGCAGAGGATGAAGAGCACCATGAAGTTTTTAAGGAGAGGCGTAAGCGGAAGGAGTTTGAAGTATTTGTTGGGGGTCTAGACAAAGATGCAACTGAGGATGATCTAAGGAAGGTTTTCAGTCAAGTTGGTGAGGTTACTGAAGTCAGACTGATGATGAATCCTCAGACAAAGAAGAACAAGGGGTTTGCTTTTTTGCGTTTTGCAACTGTTGAACAGGCGAAACGTGCTGTCACAGAGCTAAAAAATCCAGTGGTTAATGGGAAACAGTGTGGTGTCACTCCAAGTCAAGACAGCGACACCCTTTTTCTGGGTAATATATGCAAGACATGGACCAAGGAAGCTTTGAAAGAGAAGTTAAAACATTATGGAGTAGAGAATGTTGAGGATTTGACATTGGTTGAAGATAGTAACAATGAGGGAATGAATCGGGGTTTTGCTTTCTTGGAGTTCTCTTCCCGTTCTGATGCCATGGACGCTTTTAAGCGTCTCCAGAAGAGAGATGTTGTGTTTGGTGTAGATAGGACTGCAAAGGTTTCATTTGCAGATTCCTTCATTGACCCTGGTGATGAAATCATGGCACAGGTTAAAACAGTTTTCATTGATGGTCTTCCTGCTTCATGGGATGAGGATCGTGTTCGGGAGCTTCTCAAGAAATATGGGGAGATTGAAAAGATTGAGCTTGCACGGAACATGCCATCTGCCAAGAGAAAGGATTTTGGTTTTGTCACTTTTGACACTCATGATGCTGCAGTTACATGTGCTAAAAGCATCAACAATGCAGAGTTGGGGGAAGGAGAAAACAAGGCTAAAGTGAGGGCTAGGCTGTCAAGACCACTTCAGAGAGGTAAAGGGAAACACATTTCTCGAGGAGACTTCCGACCTGGCCGTGGTGGGCCTGTACGAGGTGTCAGGGGTTCCTGGGCTCGGCCAGCGCTACGTAGCTTTCCTGGGCGTGGGGCAAGAGGTTTAGGGCCTCGTCTCCCACCAGCTGCTGTAAAGAGGCCAATTGGATTTAGGGATAGACGCCCAGTTATGGCCATGCCTCCAAGAGGCAGGCCCTTGCCTCCTCCATCAAGGTCCTATGACAGGAGAGCACCTGTTCCTGCTTACCCTAAGCCGAACTTGAAGAGGGATTATGGGCGGCGTGAGGAGGTTCCTTTGAGGAGTAGACCTGCTGTAGACTATGGTTCTAGAGTTGCCCCAGAGAGACGCCCATCATATAGAGATGACTATGCTACCCGAGGATCTGGATACTCTGATATTCCAAGAAATACATCTCGGACTGCAGCAAGGAGAACTTACGAAGATGATGCTTATGGGCAAAGGTTTGAGAGGCCTCCTCCCCCAAGTTACCGTGAGGGACGTCCCCGTGATTACGACTCTATTGCAGGTTCAAAACGGCCATATGGTGCACTGGATGATGTTCCCCCTCGTTATGCTGATGCAAGTGTCCGGCAATCAAGGGCTCGTTTGGACTATGAAATGAGTGCTGGTGCTTCTCAATATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAATCTGGGATATGGGGGCAGCCGAAGTTCTATGTCCAGTCAGGATTCACATGGTCTTTATAGCAGTCGTCAGGGTATGGGCTATGGAGGAGGTTCTTTTGGTGGTAGTGATGTTGGAGGGATGTACTCATCCAGTTATGGCAGTGATTACATGCCTCGTGGAGCAGATGTTGGTGGTAGCTCTTACTCATCTCTTTATTCCAGTCGTGGTGTTGGTGGCAGCAGTTACATGGGTAGTGGTGGTTCTGGATCATACTATTGA 2439 0.4805 MPPRAVKKTAAATKRTPRATRGTPKVQPQPEASVEPVKAEEVSVPVVEVKEEVKVAEAVEVKVVEKAPEPEPVPEPEPEPEPEPEPESKAEPEQESNTNRLSPVKKEDEIKESVDEYEKNEYEKDERLDLEDNEPEYETEEYGGVDYDEKEIEQEDIPDGGDEVEEENEEGDVGEEEDGDVGEEGMEDVPEELEGEEDDEHAGELQEHAEMVDAEDEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRTAKVSFADSFIDPGDEIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGENKAKVRARLSRPLQRGKGKHISRGDFRPGRGGPVRGVRGSWARPALRSFPGRGARGLGPRLPPAAVKRPIGFRDRRPVMAMPPRGRPLPPPSRSYDRRAPVPAYPKPNLKRDYGRREEVPLRSRPAVDYGSRVAPERRPSYRDDYATRGSGYSDIPRNTSRTAARRTYEDDAYGQRFERPPPPSYREGRPRDYDSIAGSKRPYGALDDVPPRYADASVRQSRARLDYEMSAGASQYGDAYGDRLGRSNLGYGGSRSSMSSQDSHGLYSSRQGMGYGGGSFGGSDVGGMYSSSYGSDYMPRGADVGGSSYSSLYSSRGVGGSSYMGSGGSGSYY* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0414 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 409 491 IPR000504 GO:0003723
Vvi15g0414 812 SMART rrm1_1 313 392 IPR000504 GO:0003723
Vvi15g0414 812 SMART rrm1_1 410 485 IPR000504 GO:0003723
Vvi15g0414 812 SMART rrm1_1 233 306 IPR000504 GO:0003723
Vvi15g0414 812 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 812 - -
Vvi15g0414 812 SUPERFAMILY RNA-binding domain, RBD 311 477 IPR035979 GO:0003676
Vvi15g0414 812 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 165 312 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 730 749 - -
Vvi15g0414 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 302 IPR000504 GO:0003723
Vvi15g0414 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 380 IPR000504 GO:0003723
Vvi15g0414 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 411 476 IPR000504 GO:0003723
Vvi15g0414 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 396 IPR000504 GO:0003723
Vvi15g0414 812 Gene3D - 399 522 IPR012677 -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 58 73 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 561 575 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 83 126 - -
Vvi15g0414 812 CDD RRM_SF 234 305 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 730 747 - -
Vvi15g0414 812 Gene3D - 313 395 IPR012677 -
Vvi15g0414 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Vvi15g0414 812 MobiDBLite consensus disorder prediction 588 602 - -
Vvi15g0414 812 FunFam Heterogeneous nuclear ribonucleoprotein Q 313 395 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 127 201 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 642 675 - -
Vvi15g0414 812 Gene3D - 159 312 IPR012677 -
Vvi15g0414 812 CDD RRM_SF 314 381 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 58 204 - -
Vvi15g0414 812 CDD RRM_SF 411 476 - -
Vvi15g0414 812 FunFam RNA recognition water-stress protein1 399 521 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 1 45 - -
Vvi15g0414 812 MobiDBLite consensus disorder prediction 492 690 - -
Vvi15g0414 812 SUPERFAMILY RNA-binding domain, RBD 227 310 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0414 Vvi-Chr15 11211122 11216038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0414 227 568 Eukaryotic Initiation Factors Gene Family AT1G49760 23.770 3.07e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0414 - - vvi:100232913 1222.22