Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0398 ATGTCCATCAATCAATCAAGGTCCGACAAGAACGACGGGCATTACAGGAAGTCCGGCGCGCGATCCGGTAGCTCCGCGCAGCAGAGGACCTTCTTAGTCGGTGCCGGGAAGGGCGGCGGGAACGCCCCTCCTTCGTCGGCGTTTGTTCCTTCTTCATCCTTGTCTTCCAATCGGAGTTTTAAGAGGCCTAACAATGCACAAGGAGGGCAATCTAGGGTAAGTGTTGGCGCCGCAAATTCGGAGTCTGCGAATCCTTCATCTCAGCAGCGTGGTATACAGAATGGTGTCCATACACAGCCATCGTCACATGGAGTATCTGATGCCCCAGCTGGCAAACCCACTGATTCGGCGCCTCAGAGAATCAGTCGAGCTCCAAAGGCCCCATCTTCCAAGGTCCCGTCTTCTTATACAGCTGCTGTTAGTTCTGACACAGCATCACAAACAGCACCTGACAATGACGATAGCAGGTTACAATTCTCTCTTCAGTTTGGGTCCATAAATCCAGGTTTTGTGAATGGAATGCAGATACCTGCTCGAACTAGTTCAGCTCCCCCTAATTTGGATGAGCAGAAGCGGGACCAGGCACGCCATGATACTTTTATAGCTGTGCCTACATTGCCGCTTCCTTCCAATCCTAAGCAGCACTTGCCAAGGAAGGGCGTGATTGCTAGTGAGCAATCTAATGCTGGGGAGGCTCATCCCCTTTCTAAGGGTAAAAGGGATGTCCAAGTATCATCTGCATCTCCTGCTAACCAAACACAGAAGCCTTCTGTCCTTCCTATGACTGGGATTTCTATGCAAATACCGTATCACCAGCCACAGGTTTCTGTACAATTTAGTGGTCCAAACCCACAACTACAGTCTCAAGGCATGACAGCTACTTCATTGCAAATGCCTATGCCAATGCCATTACAGATGGGGAATGCTTCCCAAGTGCAGCAGCAGGTATTTGTTCCAGGTCTACAGCCCCATCCCTTGCAACCTCAGGGAATGATTCATCAGGGCCAGGGCTTGAGTTTTACAACTCCAATGGGGCCTCAACTATCCCCTCAGTTGGGAAACTTGCAAATGGGGATGACTCCGCAATATACACAACAACAGCCTGGGAAATTTGGTGGCCCTCGCAAAACTACTGTCAAGATTACTCATCCTGATACACATGAGGAGCTGAGGCTTGATAAACGGGCTGATCCATATTTGGATGGCGGGTCGTCAGGTCCATCAGGCCCAAGGTCCCATCCTAATTTGCCTCCTCCCTCCCAATCTATTCCATCATTTACACCCCCACATCCAATCAACTTCTATACCAATTCCTACAATGCCAGTTCCCTCTTCTTTCCTTCTCCAAGTTCGCTTCCCCTTACAAGCACCCCATTAACTTCCAGCACTCAAACACCAAGGTTTAACTATCCTGTTAGCCAAGGTCCACCAACTGGACCATTCATAAATGCGCCTACTCATAACTCCTTGTCTGTTAGTAAGACTGGGACGGCAATGCAGGGTGTTGCCGAACCATTGAACTTGGAACATGCCCGTGATGTTCATAATGTAATGTCTTCTGTGCCATCATCCACATCACAGGTTACAATAAAACCGGCTGTTGTCTCTGTTGTAGAAAAGGTTACAGATGCTCTACCTCCACTTAGCTCAGCTGCCACTGAAAAGGTTGAATCACCTAAACTTTTAAGGCTGCCTGGTGAAACTAGCTCATTTCATCTGCCAAGGAATACTGACATCAATTCAGAAACCTCTTTACAACAACCAAAAACTGATCTTGAACCCTCAACATCCACATTGTTACCAGGGGCAAGCAAGCAATTTTCTGTGGCCACAGATACTGTTTCTGTGGAGAGCTCAGCATCCAATACTTTGTCCTCTGCTCCAAGTGTCCTTTCTGATGAAAATGCATCAGTTGTGACCAGCAATGAAGGCAGAAGAAGAGAAACCCTTGGCAGGTCAAACTCGATTAAGGAGCATCAGAAGAAGACTGGAAAGAAAGGACATCCCCAACCACAACAGCAGGTTGGCGGGCAAACTGCTTCTTTGTCAAACTTGCCTTCTCGGCCTATGGAACGTGGTATTTCTTCAAAAATTGGAGTCACTGAGACTCTGGAACCTAAGGCAGTTCATGGTACATTGGGCAACAGTGAAGACGTCTTGGATTTTACCCGGGAACCAGTGTCTACCATTACTGCTGACAGTGCTGATGCTTCTGAATTGAAGGCTGATAGTTTTGGGGAAGGGTCTGCCCATGGACCACCCAAAACACCTGGTGCTGGTATCACTAATCATATAAAAGACACTCGTAATGAAAAGCAGTCTGATTTTTCTTTGCAAAATGAATTATCAAAATATTCAACTGTGGCAATAGAAGGACAAGGAGAAAGTGAATTGCCTGAAGGGTTCAAACAAGATGCCCATTGTTTAGAGAAGTCATCAGAATCAATTTCCTCTATATCTCTAGAAGCTGTTAAACAACCTGTACCAGATTCTGAGTTGAAGGTAACAACAAGCAGCATTGAGGTTGGATTAGTGGAAACTGCACAGGAGGTGGATGTTTCTGTCAGTTGTTGCACAGAAATTGATAGGACAACTGAAAATTCAGTGGCACCTACTCCCACAACTTTGGAATCCATAAATGTTGAAACTGTTCCATCCAATGCTGTATTACCCACTAGTTCTTATGGTGATAAGAATTCGTCTTTTGATGCTTCTTTGAGTAGAAGTGATAGTATTGGTGTCAAAGAAATTATTGTTGCAAAATCTGCTGCATCAGATCAAGAATCTGTTCCTGTTCCCACCCCATATCTTTCAGAATCAACTGTAAAACCTGAAGGGGCAGGTGTGGAAAATGGTAGTGGTGGGTTGGTTTCCCATCCTGTATCAAGTTCCAAGGATAAACCCACTGTAGAACTAAATAGGCCCAAGACTACGGTTAAAAAAAAGAAGAGGAAAGAAATTCTTCAGAAAGCTGATGCTGCTGGGACAACCTCTGATCTTTATATGGCATACAAGGGTCCAGAGGAGAAGAAAGAAACTATCATCTCTTCAGAAAGCACTTCTGCTGGTAATGTAAAACAGGTCAGTGCTGATGCTGGTCAGGAAGATGTTGTAGGAAGTGATATAGGTGAGCAGCCTAAAGCTGAGCCAGATGATTGGGAAGATGCAGCTGACATCTCCACACCGAAATTGGAAACTCAAGACAATGGTGTCGCTAATGGAGGATCAATGCTTGATGACAAAGATGGAAACGGGGTTTTGGGCAAAAAGTATTCCAGAGATTTCCTGCTGACATTTGCAGACCAATGTAATGATCTTCCGGAGGGTTTTGAAATTACATCTGATATAGCTGAGGCACTGATGATTTCTAATATTAATATGTCTCATCTTATTGATCGTGACTCATACCCAAGTCCTGGAAGAATTGTGGATAGGCAGGCAGGGGGTTCTCGACCAGATCGCCGTGGGAGTGGTGTGGTGGATGATGACAAATGGAGTAAACTTCCTGGGCCTTTCTCTTCTGGACGAGATCTGCGACCAGATATTGGTTATGGGGGTAATGTGGTAGGCTTTCGATCTGTCCAAGGAGGAAACTATGGTGTGTTAAGGAACCCACGTGGGCAGTCGACTATGCAGTATGTTGGAGGAATCCTCTCTGGACCAATGCAATCAATGGGTTCTCAGGGAGGGCAACGGAATAGTCCTGATGCTGATAGATGGCAGCGTGCTACTGGCTTCCAGAAGGGTTTAATTCCTTCTCCTCAAACTTCGGTACAGATGCACAGAGCTGAGAAGAAGTATGAAGTGGGTAAAGCGACAGATGAGGAAGAGGTAAAACAAAGGAAGTTGAAAGCTATCCTGAACAAGCTGACTCCTCAGAACTTTGAAAAGCTTTTTGAGCAAGTAAAAGCAGTTAATATTGACAATGCAGACACTCTCACTCGTGTCATCTCACAGATCTTTGACAAAGCTTTAATGGAACCTACTTTCTGTGAAATGTATGCTAACTTCTGTTTTCATCTGGCGAGAGAGCTGCCCGACTTCAGTGAAGACAATGAAAAGATCACTTTCAAAAGATTGCTTCTCAACAAGTGTCAGGAGGAATTTGAGAGAGGGGAAAGAGAACAAGAAGAAGCTAATAGAGCTGATGAGGAGGGTGAGATTAAACAGTCTGAAGAGGAAAGGGAGGAGAAGAGAATCAAAGCACGAAGAAGGATGTTGGGCAACATTAGATTGATTGGGGAATTGTACAAGAAGAGGATGTTGACCGAGAGGATAATGCATGAGTGCATCAAGAAGTTGTTAGGGCAGTATCAGAATCCTGATGAGGAAGATATAGAATCTTTGTGCAAACTGATGAGCACAATTGGAGAGATGATTGATCATCCCAAAGCCAAGGAGCATATGGATGTATACTTTGATAGGATGGCGAAGTTATCGAACAACATGAAACTATCTTCTAGGGTAAGGTTCATGTTGAAGGATGCAATTGATTTGCGAAAAAATAAATGGCAACAAAGAAGAAAAGTTGAAGGGCCGAAGAAGATTGAGGAAGTGCACAGGGATGCAGCTCAAGAAAGACAGGCTCAAGCTAGTAGGCTATCTCGTGGTCCAAGCATGAATTCATCAACAAGAAGGGGGGCCCCTCCTATGGACTTTGGTCCAAGAGGTTCAACTATGTTATCATCTCCAAATTCCCAAATGGGTGGTTTCCGGGGTTTGCCATCTCCTCAGGTTCGTGGGTTTGGTGCTCAGGATGTTCGATTAGAGGATAGACAATCTTATGAAAGCAGGACTCCATCAGTTCCATTGCCTCATAGATCCATTGGTGATGATTCTATTACTCTTGGTCCTCAGGGTGGTCTTGCTAGGGGAATGTCCATTAGAGGGCCACCAGCTATGTCTAGTGGTCCTTTGGGTGATATTTCTCCTGGTTCAGGAGACTCTAGAAGGTTGACAGCCGGTTTGAATGGTTATAGTTCTGTACCGGATAGGACAACTTACAGTTCAAGAGAGGAAATCATGCCAAGGTACATCCCCGAGAGATTTGGTGGTCCATCTGCCTATGACCAGTCAAGTACACAAGACCGAAATCTGCAGTATGTAAACAGGGATGTAAGAACCCCAGATCGTGGCTTTGATCGATCTCTTGCCACCTCTCCACCTGCACGGGCACACGGACCAGCTGTCTCACAAAATGTTCCTCCAGAGAAGGTATGGCCCGAGGAACGTTTACGTGACATGTCCATAGCAGCAATTAAAGAATTTTACAGTGCCAAAGATGAGAATGAAGTTGCTTTGTGCATCAAAGATCTAAATTCCCCAGGCTTCTACCCATCTATGGTGTCTATTTGGGTTACAGACTCTTTTGAGAGGAAAGACAAAGAAATGGACATGCTGGCTAAGCTTCTTGTCAATCTAACAAAATCTCGGGATGCCATGTTAAGTCAAGTTCAACTAATCAAAGGATTTGAAGCTGTACTGACTGCTTTGGAGGATGCTGTAAATGATGCCCCAAAAGCAGCAGAATTTCTTGGTCGCATCTTTGCCATGGTTATCATAGAGAATGTGATTCCCTTAAGGGAGTTAGGGCAGATAATACTTGAAGGTGGAGAAGAGCCTGGTCGGCTGCGAGAAATCGGGCTTGCGGCTGAAGTTCTGGGGAGCACATTGGAGATTATCAAATCAGAGAAAGGGGAGAATGTGTTGAACGAGATTCGCAAAGTGTCCAATTTGCGGTTGGATGACTTCCGGCCTCCTGATCCTTCTTACAGATCAGCAAAATTAGATAAATTTATTTAG 5802 0.4528 MSINQSRSDKNDGHYRKSGARSGSSAQQRTFLVGAGKGGGNAPPSSAFVPSSSLSSNRSFKRPNNAQGGQSRVSVGAANSESANPSSQQRGIQNGVHTQPSSHGVSDAPAGKPTDSAPQRISRAPKAPSSKVPSSYTAAVSSDTASQTAPDNDDSRLQFSLQFGSINPGFVNGMQIPARTSSAPPNLDEQKRDQARHDTFIAVPTLPLPSNPKQHLPRKGVIASEQSNAGEAHPLSKGKRDVQVSSASPANQTQKPSVLPMTGISMQIPYHQPQVSVQFSGPNPQLQSQGMTATSLQMPMPMPLQMGNASQVQQQVFVPGLQPHPLQPQGMIHQGQGLSFTTPMGPQLSPQLGNLQMGMTPQYTQQQPGKFGGPRKTTVKITHPDTHEELRLDKRADPYLDGGSSGPSGPRSHPNLPPPSQSIPSFTPPHPINFYTNSYNASSLFFPSPSSLPLTSTPLTSSTQTPRFNYPVSQGPPTGPFINAPTHNSLSVSKTGTAMQGVAEPLNLEHARDVHNVMSSVPSSTSQVTIKPAVVSVVEKVTDALPPLSSAATEKVESPKLLRLPGETSSFHLPRNTDINSETSLQQPKTDLEPSTSTLLPGASKQFSVATDTVSVESSASNTLSSAPSVLSDENASVVTSNEGRRRETLGRSNSIKEHQKKTGKKGHPQPQQQVGGQTASLSNLPSRPMERGISSKIGVTETLEPKAVHGTLGNSEDVLDFTREPVSTITADSADASELKADSFGEGSAHGPPKTPGAGITNHIKDTRNEKQSDFSLQNELSKYSTVAIEGQGESELPEGFKQDAHCLEKSSESISSISLEAVKQPVPDSELKVTTSSIEVGLVETAQEVDVSVSCCTEIDRTTENSVAPTPTTLESINVETVPSNAVLPTSSYGDKNSSFDASLSRSDSIGVKEIIVAKSAASDQESVPVPTPYLSESTVKPEGAGVENGSGGLVSHPVSSSKDKPTVELNRPKTTVKKKKRKEILQKADAAGTTSDLYMAYKGPEEKKETIISSESTSAGNVKQVSADAGQEDVVGSDIGEQPKAEPDDWEDAADISTPKLETQDNGVANGGSMLDDKDGNGVLGKKYSRDFLLTFADQCNDLPEGFEITSDIAEALMISNINMSHLIDRDSYPSPGRIVDRQAGGSRPDRRGSGVVDDDKWSKLPGPFSSGRDLRPDIGYGGNVVGFRSVQGGNYGVLRNPRGQSTMQYVGGILSGPMQSMGSQGGQRNSPDADRWQRATGFQKGLIPSPQTSVQMHRAEKKYEVGKATDEEEVKQRKLKAILNKLTPQNFEKLFEQVKAVNIDNADTLTRVISQIFDKALMEPTFCEMYANFCFHLARELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANRADEEGEIKQSEEEREEKRIKARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDIESLCKLMSTIGEMIDHPKAKEHMDVYFDRMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLSRGPSMNSSTRRGAPPMDFGPRGSTMLSSPNSQMGGFRGLPSPQVRGFGAQDVRLEDRQSYESRTPSVPLPHRSIGDDSITLGPQGGLARGMSIRGPPAMSSGPLGDISPGSGDSRRLTAGLNGYSSVPDRTTYSSREEIMPRYIPERFGGPSAYDQSSTQDRNLQYVNRDVRTPDRGFDRSLATSPPARAHGPAVSQNVPPEKVWPEERLRDMSIAAIKEFYSAKDENEVALCIKDLNSPGFYPSMVSIWVTDSFERKDKEMDMLAKLLVNLTKSRDAMLSQVQLIKGFEAVLTALEDAVNDAPKAAEFLGRIFAMVIIENVIPLRELGQIILEGGEEPGRLREIGLAAEVLGSTLEIIKSEKGENVLNEIRKVSNLRLDDFRPPDPSYRSAKLDKFI* 1934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 570 600 - -
Vvi15g0398 1933 Pfam MA3 domain 1751 1859 IPR003891 -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 645 660 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 45 105 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1558 1572 - -
Vvi15g0398 1933 SUPERFAMILY ARM repeat 1274 1505 IPR016024 -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 411 426 - -
Vvi15g0398 1933 FunFam Eukaryotic translation initiation factor 4G 1738 1932 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 937 991 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 229 258 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 380 398 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1503 1667 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 241 258 - -
Vvi15g0398 1933 SMART if4_15 1280 1503 IPR003890 GO:0003723|GO:0005515
Vvi15g0398 1933 Coils Coil 1362 1401 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 620 692 - -
Vvi15g0398 1933 Gene3D - 1739 1933 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 549 600 - -
Vvi15g0398 1933 ProSiteProfiles MI domain profile. 1744 1868 IPR003891 -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1708 1735 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1528 1546 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1012 1054 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1 155 - -
Vvi15g0398 1933 Gene3D - 1280 1516 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 456 477 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 456 472 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 620 644 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1653 1667 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1503 1527 - -
Vvi15g0398 1933 Pfam MIF4G domain 1280 1503 IPR003890 GO:0003723|GO:0005515
Vvi15g0398 1933 FunFam Eukaryotic translation initiation factor 4G 1280 1516 - -
Vvi15g0398 1933 SUPERFAMILY ARM repeat 1740 1922 IPR016024 -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1147 1162 - -
Vvi15g0398 1933 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 356 1933 IPR045208 GO:0003743
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1133 1179 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 128 155 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 731 764 - -
Vvi15g0398 1933 SMART ma3_7 1745 1859 IPR003891 -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 667 690 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 1371 1396 - -
Vvi15g0398 1933 MobiDBLite consensus disorder prediction 363 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0398 Vvi-Chr15 10927993 10942446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0398 1 752 Eukaryotic Initiation Factors Gene Family AT3G60240 36.959 7.80e-98 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0398 K03260 - vvi:100261523 3620.86