Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0397 ATGAAGTGTTTCTACTACTTTAAAGATAAGACCCGATTGAAGGTACAAAGATCAGCGCCGGAGTTGAAAAACCAAAGCAAATCATACTACTCGGGGTCTGATCTGGTCATTAAATCTTCGTGTTCAACTACTTCACGGCGCAGTATACCAGAATTATATGAAGAGAAGGCTCAAAACTTGCGAGTCTTCTCTTTTTCCGAGCTTAGACATGCCACACATGATTTCAGTAGGATGCTAAAGCTTGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGTTCAATCAAGCCTGCTGATGGAAAGGGAGACTCCTTTGAGGTTGCCATTAAAAGGCTGAACCCAGATGGTGTTCAGGGTCATAAACAATGGGTGGCAGAAGTTCAATTTCTCGGTATTGTGGAGCACCCAAATCTTGTCAAGCTTATAGGATACTGTGCTGTAGATGGAGAGAGAGGAATTCAACGGCTACTTGTATATGAGTACATGCCAAACAAAAGCTTGGAAGATCACCTCTTCAATAAAGCTATCCCAGCTCTTCCTTGGCAGACAAGATTACAGACAGTACTTGGAGCAGCTCAAGGATTAGCTTATTTGCATGAAGAATTGGAAGTTCAGGTGATATATCGAGATTTTAAATCATCAAATGTGCTACTGGACAAGGATTTTAACCCAAAGCTTTCTGACTTTGGGCTTGCTAGGGAGGGGCCAGCAGATGGGTTTACTCATGTTTCAACAGCAGCGGTAGGAACTTTTGGGTATGCTGCTCCAGATTATATTGAGACAGGCCACCTGACAACTAAGAGTGATGTGTGGAGTTTTGGTGTTGTACTGTATGAGATCCTGACAGGCAGGCGATCGATGGAGAGAAACCACCCAAGAGCAGAGCAAAAGCTTTTGGAATGGGTGAAACATTTCCCTGCTAATAGTAAGAAATTTCACATGATAATGGACTGGCGCCTGGAAAACCAGTATCCTATCAGTACAGCTCGAAAAATTGCCAAGTTGGCCGACAGTTGTTTGTCGAAGAGTGCAAAAGACCGGCCAAAGATGAGTGAAGTTGTAGAGACTTTGAAGCAAATAATCCAACTCCCTGATGAAGGCGGCCCAAGTGAGAAAAGCCCTGAATCTTTCGACAACGATTCAGATGACAAAGATAAGAAGGCAGATCAACCAGGGCCTTCTGACTCCTGGAAAAGGCGGATGGCCCATCTAGCAAGCCTGGGTGAACATGTAGAAGGGTCCAACAGGAAAAGGTTTATGATCATGCAAAGGGCCAAAGTTCCTTGA 1284 0.4408 MKCFYYFKDKTRLKVQRSAPELKNQSKSYYSGSDLVIKSSCSTTSRRSIPELYEEKAQNLRVFSFSELRHATHDFSRMLKLGEGGFGCVYKGSIKPADGKGDSFEVAIKRLNPDGVQGHKQWVAEVQFLGIVEHPNLVKLIGYCAVDGERGIQRLLVYEYMPNKSLEDHLFNKAIPALPWQTRLQTVLGAAQGLAYLHEELEVQVIYRDFKSSNVLLDKDFNPKLSDFGLAREGPADGFTHVSTAAVGTFGYAAPDYIETGHLTTKSDVWSFGVVLYEILTGRRSMERNHPRAEQKLLEWVKHFPANSKKFHMIMDWRLENQYPISTARKIAKLADSCLSKSAKDRPKMSEVVETLKQIIQLPDEGGPSEKSPESFDNDSDDKDKKADQPGPSDSWKRRMAHLASLGEHVEGSNRKRFMIMQRAKVP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0397 427 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0397 427 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 367 - -
Vvi15g0397 427 Gene3D Phosphorylase Kinase; domain 1 47 160 - -
Vvi15g0397 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vvi15g0397 427 MobiDBLite consensus disorder prediction 360 427 - -
Vvi15g0397 427 FunFam Serine/threonine-protein kinase BIK1 41 160 - -
Vvi15g0397 427 CDD STKc_IRAK 81 359 - -
Vvi15g0397 427 Gene3D Transferase(Phosphotransferase) domain 1 161 374 - -
Vvi15g0397 427 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Vvi15g0397 427 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Vvi15g0397 427 SUPERFAMILY Protein kinase-like (PK-like) 57 356 IPR011009 -
Vvi15g0397 427 MobiDBLite consensus disorder prediction 370 418 - -
Vvi15g0397 427 PANTHER OS01G0588500 PROTEIN-RELATED 39 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0397 Vvi-Chr15 10890835 10897345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0397 1 364 Glycoside Hydrolase AT3G07070 40.789 3.61e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi15g0397 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0397 - - vvi:100254696 860.522