Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0390 ATGACTGACGCTCTGTCCCCGCCTCCGGCATGGTTTCCCGGGATTTTTCCAGATGAAGACTTGTCGCTGATCGATTCTCTGCCTCTCTTCACTTTCGGCTCTGTCAGGGGCCGCAACTCATCCTCCGAAGGCGATTGCGCCGTGTGTCTCTCCAAGTTTGAGCCTCACGATCAGCTTCGGCTGCTTCCGATCTGCTGCCACGCGTTCCATGCTCGATGCATCGACACGTGGCTGGCATCCAATCAGACGTGTCCTCTGTGTCGATCTCCGATATTCGCGACGGAAGCGGATTTTATGAAGGCCATACTCGCAGGCGAGACGATCGATGACGCCGGAGCTCAGTCGAATCAACTTGCGCCGGAGCCTCCGGGGCCTAGCACCGCGGCGGAGGTAGCTTCAGGACGAAGCTGGTTGAAGGATTATGTAGACAGGTTGTCTTCGACGGCGTCGTTGTCAATCTCCTCACGTGCGCTATCGTTCCGGAGCTCCGGCAGGTTTTTCACCGGAAGCAGTCGCCGCAATGAAACTGCCAGCGTCGGCGAGTGGGATTTGGAGGCGAATCGGGTTGGAGAAGAGATAAGCGAAATGTTTCGGTGGTTTTCGGGGATATAA 612 0.567 MTDALSPPPAWFPGIFPDEDLSLIDSLPLFTFGSVRGRNSSSEGDCAVCLSKFEPHDQLRLLPICCHAFHARCIDTWLASNQTCPLCRSPIFATEADFMKAILAGETIDDAGAQSNQLAPEPPGPSTAAEVASGRSWLKDYVDRLSSTASLSISSRALSFRSSGRFFTGSSRRNETASVGEWDLEANRVGEEISEMFRWFSGI* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0390 203 ProSiteProfiles Zinc finger RING-type profile. 46 88 IPR001841 -
Vvi15g0390 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 21 160 - -
Vvi15g0390 203 FunFam E3 ubiquitin-protein ligase ATL4 19 93 - -
Vvi15g0390 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 97 IPR013083 -
Vvi15g0390 203 SUPERFAMILY RING/U-box 39 93 - -
Vvi15g0390 203 Pfam Ring finger domain 45 88 IPR001841 -
Vvi15g0390 203 SMART ring_2 46 87 IPR001841 -
Vvi15g0390 203 CDD RING-H2_EL5-like 45 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0390 Vvi-Chr15 10761732 10762760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0390 20 163 C3H Transcription Factor Family AT5G05810 39.865 3.88e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0390 K10663 - cit:102616322 207.994