Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0384 ATGGCATCCACTTTCATCACACTCGCTAGACCCTTCTCGTCTCACAAGCCCCACACTCCTTCCCCCAGCAAGAGATTACTAGGACTTCGCAGTAGTGCACTGAAAATCAACGCAATCGCCAAGAAGTGGGAACCCACAAAGGTTGTTCCACAAGCTGATAGAGTCCTGATTCGTTTGCAGGACCTACCTGAGAAATCATCTGGTGGAGTTTTGCTGCCCAAATCTGCTGTTAAATTTGAGCGATACCTTATGGGGGAGATTCTCTCTATTGGTGCTGATGTTGGGGAAGTTGAGGCTGGGAAGAAGGTTCTTTTCTCAGACATAAATGCTTATGAGGTGGATTTGGGAACAGATGGTAGACACTGCTTTTGCAAAGAAAGTGACCTGTTGGCTGTGGTTGAGTAG 405 0.4716 MASTFITLARPFSSHKPHTPSPSKRLLGLRSSALKINAIAKKWEPTKVVPQADRVLIRLQDLPEKSSGGVLLPKSAVKFERYLMGEILSIGADVGEVEAGKKVLFSDINAYEVDLGTDGRHCFCKESDLLAVVE* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0384 134 PANTHER 10 KDA HEAT SHOCK PROTEIN 46 132 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi15g0384 134 PRINTS 10kDa chaperonin signature 48 63 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi15g0384 134 PRINTS 10kDa chaperonin signature 72 93 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi15g0384 134 PRINTS 10kDa chaperonin signature 120 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi15g0384 134 PRINTS 10kDa chaperonin signature 98 110 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi15g0384 134 FunFam 10 kDa chaperonin 43 134 - -
Vvi15g0384 134 CDD cpn10 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi15g0384 134 Pfam Chaperonin 10 Kd subunit 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi15g0384 134 Gene3D GroES chaperonin 43 134 IPR037124 GO:0006457
Vvi15g0384 134 SMART Cpn10_2 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vvi15g0384 134 SUPERFAMILY GroES-like 47 134 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0384 Vvi-Chr15 10655740 10660406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0384 12 134 Calmodulin-binding Proteins AT5G20720 30.303 4.30e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0384 K04078 - vvi:100252967 262.692