Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0380 ATGAAGTACCTGAGGTTCCTCCGCAAGCGCATGAACACCAAACCCTCTCATGGGCCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGGATGATTCCACACAAGACCAAGCGTGGAGCAGCGACCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCCTTAGAGGTTGGATGGAACCATTACGATACCATCAGAGAGTTGGAGAAGAAAAGGAAAGAGAGGCGTTTAGCATAG 348 0.5172 MKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAATLARLKAYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSLEVGWNHYDTIRELEKKRKERRLA* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0380 115 ProSitePatterns Ribosomal protein L13 signature. 33 56 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vvi15g0380 115 NCBIfam 50S ribosomal protein L13 2 97 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vvi15g0380 115 Pfam Ribosomal protein L13 9 59 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi15g0380 115 SUPERFAMILY Ribosomal protein L13 1 98 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vvi15g0380 115 PIRSF RPL13p_RPL13Aa_RPL16e_RPL13o 1 108 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi15g0380 115 Gene3D Ribosomal protein L13 1 98 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vvi15g0380 115 PANTHER RIBOSOMAL PROTEIN L13 1 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0380 Vvi-Chr15 10574258 10574605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0380 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G24830 88.696 1.35e-75 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0380 K02872 - vvi:100259781 216.083