Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0366 ATGGAATTGGTCGTTAATGAAAAATCTCGGTACAGAATTTTCCGAAATAGACAGAAGGGTCTAAAGAAGAAGATCCACGCATTGTCAACTCTGTGTGATGTTAAAGCATGCATGATCCTATATGGTCCTAATGCCCATGGCACCGAGTCTTCTCAGCCTGACATTTGGCCAGAAAATCGCAATGAAGTTGAAGGTATAATTGAAAACTATAGGAAGGAGAGGAAGAAAGACCACGGAAAGAGGACACTGGATTTATCTGATGTTCTCCAAACCAAGAAGAAGACTAACCTTGAGCTGCGAGAGGTGCAGGAAAAAAATGTCAAAACCAAGACCGGAGTGGATGAGTTTTCCTATGAACAACTTATGGAAATTATTGATAAATTGGATAAGAAGCATGAAGCTGTGCAGAATATGATTGATTCAAAGAAGGGAAAAGCGAGGCTGATGAGTGAGACTACTGTGGGTTGCTCTAATATCAAAGTGCCCGTGGATTGTCAAGGCACCGGAGTGGTGGAATCTGATTTGGGTTTCATGATGAACCAGATGGGGATGGTGGTGGAGAATCATCAATATGCAGAATTAGGAGCCACTACTACAAAAATAGTTTATGGTGTCACTATTTACGGGACATATGGTTTGGGATTGTCCATAGAGTAG 657 0.4155 MELVVNEKSRYRIFRNRQKGLKKKIHALSTLCDVKACMILYGPNAHGTESSQPDIWPENRNEVEGIIENYRKERKKDHGKRTLDLSDVLQTKKKTNLELREVQEKNVKTKTGVDEFSYEQLMEIIDKLDKKHEAVQNMIDSKKGKARLMSETTVGCSNIKVPVDCQGTGVVESDLGFMMNQMGMVVENHQYAELGATTTKIVYGVTIYGTYGLGLSIE* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0366 218 Coils Coil 85 105 - -
Vvi15g0366 218 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Vvi15g0366 218 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Vvi15g0366 218 Gene3D - 6 96 IPR036879 GO:0003677|GO:0046983
Vvi15g0366 218 Coils Coil 118 138 - -
Vvi15g0366 218 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Vvi15g0366 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 6 45 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0366 Vvi-Chr15 10215309 10222502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0366 1 70 Type I MADS-box Gene Family AT3G05860 41.429 4.39e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi15g0366 SRF-TF 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0366 - - vri:117931954 372.089