Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0339 ATGCTTTTTGAAGATATGTTCGATTCCAAAAGTCCAAACTTTAAGCAAGAGTTTCAGACAGCATGGCTGCAGCTAAGCTCGCCCTGTTTGTGGGAGGATGTCAGCATAGTTCTGCAACTTGGGTTCCTTGGAATCTTCTTACTCCATCTTGTACAAAAAATTGTGGGCCATTTATGGAAACACAGGACAACAGTAACAGATAAAGGCATAGAGATGTATCCCAATGAAGCAAAAGCCAGCTTCTCTTGCAAAGCCAGCATAATTTGTTCCAGTATACTACTGGGGATTCATGTCATTGTGCTACTAATGCCACCAAATGGAAGTGAGGGCAACTGCAAATCTCCAATCCTGGTTCTTTCATCAGAGGTCATGCAAGTGATGATATGGTTGATTACACTGATTGCAGTATGCAAGATTTCGACTAAGAAGTACGTGAAGTTTCCTTGGATTCTAAGAACCTATTGGCTATGCAGCTTCTTGCTTTCTGTTATCCACACGGCTTTTGATGTCCATTTCCTTGTTACAAACAATGGGCACCTGAGAATGCAGGATTACACTGACTTCCTTGGTCTCCTTGCATCAACCTGCCTATTTGGTATCTCAATCAGAGGGAAGACAGGCACGGTTTTGATCTCCCAGAATGGCTTAGCTGATCCACTTCTCAATGGAAAAACTGATAATCATTCAGAAGGCAAGACAGAATCTCCTTATGGGAAAGCTACTCTTTTCCAACTCATTACCTTCTCTTGGCTCAATCCCTTATTTGCTGTTGGGATCAAAAAACCCCTTGCGCAAGATGAAATCCCAGATGTTGATGTCAAAGACTCTGCTGAATTTACCTCTCATTATTTTGATGAATGCCTGAAACATGTTAGGGAGAGAGATGGAACTACAAATCCATCTATCTACAAGGCGATATTTCTTTTTATCTGGAAGAAAGCTGCAATTAATGCACTTTTTGCAATGATAAGTGCAGCTGCATCATATGTTGGTCCATATCTTATTGATGACTTTGTGAATTTCCTAAGCATGAAGAAAACTCGTAGCTTAGAGAGCGGGTACCTTCTTGCACTTGCCTTCTTAAGTGCCAAAACAGTCGAAACTATAGCACAGAGGCAATGGATATTTGGTGCCCGCCAGCTAGGCCTTCGCCTGAGAGCTGCACTGATATCTCACATATACAAAAAGGGCCTAGTTTTGTCAAGCCAATCCCGCCAAAGCCACACTAGTGGAGAGATCATTAACTATATGGGTGTGGATATCCAAAGAATGACAGACTTCATCTGGTATATGAACACAATCTGGATGTTGCCAATACAAATTTCTTTAGCAATTTGTGTTCTAAACATGAACATCGGTTTGGGGTCACTGGCAGCATTAGCAGCAACCTTAATGGTGATGGCTTGCAACATCCCCCTTACAAGAATCCAGAAAAGATACCAGTCTAAGATCATGGAAGCCAAGGATGAAAGGATGAAAGCCACTTCAGAAGTTCTTCGAAACATTAAGACTCTCAAACTTCAGGCATGGGACAGTCAGTTTCTTCATAAGCTAGAAAGCTTGAGGAAAATAGAGTACAATTGGCTGTGGAAGTCGCTAAGACTGGGAGCACTTTCTGCTTTTATCTTCTGGGGATCACCCACGTTTATCTCTGTGGTGACTTTTGGGGCATGTCTTCTGATGGGGATTGAACTCACTTCTGGGAGAGTCTTGTCTGCATTGGCTACTTTCCGAATGTTACAAGACCCTATATTCAATCTACCTGATTTACTCTCTGTGATTGCACAGGGTAAAGTGTCAGTAGATAGAGTTGCTTCTTTCCTCCAAGAAGATGAAGTTCAGTCTGATACAATCGAGTTTGTTCCAAAAGATCAAACAGAGTTTGAAGTCGAGATAGACAACGGTAAATTCAGCTGGAACCCTGACTCAAGCAGCCCAACACTAGACAAAATACAGTTAAAAGTGAAGAGGGGAATGAAGGTGGCAATTTGTGGGACTGTAGGATCTGGGAAGTCTAGCCTGCTCTCTTGCATACTAGGAGAAATAAAAAAGCTGTCGGGTACTGTAAAGATTGGTGGTACAAAGGCCTATGTACCTCAGTCCCCATGGATACTAACAGGAAATGTCAAAGAGAACATCCTCTTTGGGAACCGATATGACAGTGTCAAGTATGATGAAACTGTTAAAGCATGTGCTTTAACTAAGGATTTTGAGCTTTTCCCCTGCGGTGACCTCACGGAAATAGGTGAAAGAGGGATAAATATGAGTGGAGGCCAGAAGCAAAGGATTCAAATAGCCCGAGCAGTTTACGAGGATGCTGATATATATTTGCTTGATGACCCATTCAGTGCTGTGGATGCTCATACAGGCACCCAACTCTTTAAGGACTGCCTGATGGGGATTCTAAAGAACAAGACCATTCTTTATGTTACTCACCAAGTTGAGTTTCTTCCAGCAGCAGACTTCATTCTGGTGATGCAAGATGGAAGAATAGCACAAGCTGGAAGATTTGAGCAACTTTTAAAACAAAACATAGGATTTGAAGTTTTAGTAGGTGCTCATAACCAAGCTCTGGAATCCATCCTGACAGTTGAAAATTCAAGTAGAACATCGAAGGACCCAGTACCTGAAAATGAATCCAATAAAGATCCCACTTCAAATTCAGAAATGATCCATACTCAGCATGACTCAGAGCATAATATCTCCCTAGAGATAACAGAAAAACAAGGAAGATTAACTCAAGATGAAGAAAGAGAAAAAGGAAGCATTGGAAAAGAAGTTTACATGTCATATTTGACGATTGTGAGAGGCGGGGCTCTAGTTCCAATCATAATCTTGGCACAGTCAATGTTCCAAGTATTACAGGTAGCTAGCAACTACTGGATGGCATGGGCTTCTCCTCCTACAAGTGAAAGTAGGCCAAAAATGGGGTTGGATTACATACTATTCGTGTATATACTTCTTGCTGTTGGAAGTTCACTTTTTGTGCTGCTTCGAGCCTCGCTAGTAGCAATAACAGGACTTTCAACAGCACAAAAGCTCTTCGTGAAAATGCTGCAGAGTGTGGTCCGGGCTCCAATGGCCTTTTTTGATTCAACACCTACTGGAAGAATCTTAAACCGGGCATCTATTGATCAAAGTGTGCTAGACATGGAAATGGCGAACAGGTTAGGCTGGTGTGCTTTTTCAGTAATACAGATTCTAGGAACAATCGCAGTGATGTCTCAGGTAGCATGGGAAGTATTTGTTATCTTCATTCCAGTAACTGCAATCTGCATCTGGTACCAACAATACTACATACCAACTGCAAGAGAATTGGGCCGTTTGGCAAGCATACAGCAATCTCCAATCCTACATCACTTTTCTGAATCACTTTCTGGAGCTGCGACGATCCGTGCTTTCGACCAAGAAGACCGCTTCATTCATGCAAATCTTGATCTTGTTGACAACTTCTCAAGGCCATGGTTTCATAATGTGTCAGCAATGGAATGGCTTTCTTTCAGACTCAACGTATTATCCAATTTTGTCTTCGCCTTTTCATTGGTTTTGCTTGTGAGCCTTCCTGAAGGGATCATCAATCCAAGCATCGCAGGGTTAGCAGTAACATATGGAATAAATTTGAATGTTCTACAAGCTTCAGTTATATGGAACATTTGCAATGCAGAGAATAAAATGATCTCAGTTGAAAGAATTCTTCAGTATTCAAAAATTAAAAGTGAAGCACCTCTTGTGATTGAAGAGTGCAGACCAGAAAATAACTGGCCCCAAGTTGGAACAATTTGCTTCCAGAATTTGCAGATCCGTTATGCTGAACACCTCCCATCTGTTCTCAAAAACATTAGCTGCACATTTCCTGGAGGGATGAAGATTGGAGTTGTAGGAAGGACTGGAAGTGGAAAATCAACACTCATACAGGCCATTTTCAGGATCGTTGAGCCCAGAGAAGGGAGTATTATCATTGATGGTGTGGACATTTCCAAGATAGGCCTTCATGATCTCAGATCAAGGCTTAGCATCATCCCCCAGGACCCAGCAATGTTTGAGGGAACAGTTAGAGGAAACCTCGACCCATTGGACCAGCATCCTGATGGTCAAGTCTGGGAGGCCCTGGATAAATGTCAACTAGGTGATCTAGTTCGGGCAAAGGAAGAAAAGTTGGATTCATCAGTAGTTGAGAATGGGGAAAACTGGAGTGTGGGACAAAGGCAGTTGGTCTGTCTTGGAAGAGCATTGCTAAAGAGAAGCAGCATTCTTGTTCTAGATGAAGCGACGGCGTCAGTTGATTCTGCAACTGATGGGGTGATACAGAAGATCATTAGTCAAGAGTTCAAAGATCGGACAGTTGTAACTATAGCTCACAGAATCCACACAGTTATAGACAGCGATCTTGTTTTGGTCCTCAGTGAAGGGAGGATTGCAGAGTATGACACACCAGCAAAGCTACTTGAAAGAGATGATTCATTCTTCTCAAAACTCATAAAGGAGTACTCCAAGAGATCGAAAGGTTTCGGCAAGTTGGCAATATCGACATAA 4533 0.4218 MLFEDMFDSKSPNFKQEFQTAWLQLSSPCLWEDVSIVLQLGFLGIFLLHLVQKIVGHLWKHRTTVTDKGIEMYPNEAKASFSCKASIICSSILLGIHVIVLLMPPNGSEGNCKSPILVLSSEVMQVMIWLITLIAVCKISTKKYVKFPWILRTYWLCSFLLSVIHTAFDVHFLVTNNGHLRMQDYTDFLGLLASTCLFGISIRGKTGTVLISQNGLADPLLNGKTDNHSEGKTESPYGKATLFQLITFSWLNPLFAVGIKKPLAQDEIPDVDVKDSAEFTSHYFDECLKHVRERDGTTNPSIYKAIFLFIWKKAAINALFAMISAAASYVGPYLIDDFVNFLSMKKTRSLESGYLLALAFLSAKTVETIAQRQWIFGARQLGLRLRAALISHIYKKGLVLSSQSRQSHTSGEIINYMGVDIQRMTDFIWYMNTIWMLPIQISLAICVLNMNIGLGSLAALAATLMVMACNIPLTRIQKRYQSKIMEAKDERMKATSEVLRNIKTLKLQAWDSQFLHKLESLRKIEYNWLWKSLRLGALSAFIFWGSPTFISVVTFGACLLMGIELTSGRVLSALATFRMLQDPIFNLPDLLSVIAQGKVSVDRVASFLQEDEVQSDTIEFVPKDQTEFEVEIDNGKFSWNPDSSSPTLDKIQLKVKRGMKVAICGTVGSGKSSLLSCILGEIKKLSGTVKIGGTKAYVPQSPWILTGNVKENILFGNRYDSVKYDETVKACALTKDFELFPCGDLTEIGERGINMSGGQKQRIQIARAVYEDADIYLLDDPFSAVDAHTGTQLFKDCLMGILKNKTILYVTHQVEFLPAADFILVMQDGRIAQAGRFEQLLKQNIGFEVLVGAHNQALESILTVENSSRTSKDPVPENESNKDPTSNSEMIHTQHDSEHNISLEITEKQGRLTQDEEREKGSIGKEVYMSYLTIVRGGALVPIIILAQSMFQVLQVASNYWMAWASPPTSESRPKMGLDYILFVYILLAVGSSLFVLLRASLVAITGLSTAQKLFVKMLQSVVRAPMAFFDSTPTGRILNRASIDQSVLDMEMANRLGWCAFSVIQILGTIAVMSQVAWEVFVIFIPVTAICIWYQQYYIPTARELGRLASIQQSPILHHFSESLSGAATIRAFDQEDRFIHANLDLVDNFSRPWFHNVSAMEWLSFRLNVLSNFVFAFSLVLLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYSKIKSEAPLVIEECRPENNWPQVGTICFQNLQIRYAEHLPSVLKNISCTFPGGMKIGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDGVDISKIGLHDLRSRLSIIPQDPAMFEGTVRGNLDPLDQHPDGQVWEALDKCQLGDLVRAKEEKLDSSVVENGENWSVGQRQLVCLGRALLKRSSILVLDEATASVDSATDGVIQKIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSEGRIAEYDTPAKLLERDDSFFSKLIKEYSKRSKGFGKLAIST* 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0339 1510 Pfam ABC transporter 648 782 IPR003439 GO:0005524
Vvi15g0339 1510 CDD ABC_6TM_ABCC_D2 941 1235 IPR044726 GO:0140359
Vvi15g0339 1510 Gene3D ABC transporter type 1, transmembrane domain 906 1241 IPR036640 GO:0005524|GO:0016020
Vvi15g0339 1510 FunFam ABC transporter C family member 5 904 1241 - -
Vvi15g0339 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 596 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi15g0339 1510 FunFam ABC transporter C family member 5 615 862 - -
Vvi15g0339 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1253 1490 IPR027417 -
Vvi15g0339 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi15g0339 1510 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 239 1498 - -
Vvi15g0339 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 846 IPR027417 -
Vvi15g0339 1510 Gene3D - 1243 1496 IPR027417 -
Vvi15g0339 1510 SUPERFAMILY ABC transporter transmembrane region 309 612 IPR036640 GO:0005524|GO:0016020
Vvi15g0339 1510 Coils Coil 477 497 - -
Vvi15g0339 1510 MobiDBLite consensus disorder prediction 864 891 - -
Vvi15g0339 1510 SUPERFAMILY ABC transporter transmembrane region 942 1238 IPR036640 GO:0005524|GO:0016020
Vvi15g0339 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 853 IPR003439 GO:0005524
Vvi15g0339 1510 CDD ABCC_MRP_domain2 1258 1478 - -
Vvi15g0339 1510 FunFam ABC transporter C family member 10 298 612 - -
Vvi15g0339 1510 CDD ABCC_MRP_domain1 630 830 - -
Vvi15g0339 1510 Pfam ABC transporter 1277 1425 IPR003439 GO:0005524
Vvi15g0339 1510 SMART AAA_5 657 830 IPR003593 GO:0016887
Vvi15g0339 1510 SMART AAA_5 1286 1471 IPR003593 GO:0016887
Vvi15g0339 1510 Pfam ABC transporter transmembrane region 948 1187 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi15g0339 1510 Pfam ABC transporter transmembrane region 316 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi15g0339 1510 Gene3D - 628 859 IPR027417 -
Vvi15g0339 1510 MobiDBLite consensus disorder prediction 892 918 - -
Vvi15g0339 1510 FunFam ABC transporter C family member 3 1243 1495 - -
Vvi15g0339 1510 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524|GO:0016887
Vvi15g0339 1510 CDD ABC_6TM_ABCC_D1 316 604 IPR044746 GO:0140359
Vvi15g0339 1510 Gene3D ABC transporter type 1, transmembrane domain 289 615 IPR036640 GO:0005524|GO:0016020
Vvi15g0339 1510 MobiDBLite consensus disorder prediction 864 918 - -
Vvi15g0339 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1494 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0339 Vvi-Chr15 9661911 9669697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0339 609 844 Calmodulin-binding Proteins AT2G36910 31.621 2.53e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0339 - - vvi:100259790 2949.46