Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0338 ATGGCTCCCAGGAAGAAACCCAGCTCCAAATCAAACCAAAACCAACCTAACTCTCAGCCTTCCAAGTTCGGCATCCAACACTTCTTCCTTCGCCACTCCCAATCTTCCACCTCTCGCCCTAACGACGCTGTTTGCACCCCCGGCCCTAATCCACCATCACAGTCTGCTCCACCCCTTCAAAATCCTACAGCTGCTTGTCCTGAAAATGTTCTTATTTCAGCAACTGCTGCACGAAGCAACGCCGTTTCAGCCCCAAAACCTCCACCGTTGGAATCTGGTTTAGCACTTCAAAACCCTAAAACTGCTCCGAGTTTGGGAATTGCTGATGAAAACGATGCCGTTTCAGCCTCTGGGAACCCTCGGAAAGCTCTGAATTTGGATAGTACTGATCCAAAGAATGGCCTTTCAACCTCTCAAAACCCTAGCAATGCTGGTCGAATTGAATCTGTTTCAAACTTTGGAAATGCCCTGAATTCAGGAACAGCGGATTCAAACAATGCAGTTTCTACCAGGAAGAACCCCAGAAATGCTTTCCCAAGTGCGTCGACATCAAATTCACGGAAAACTGATCCGAATAACCCCTCCCAGAGTACGCCTCCTGGGAATATTCCAGCAATGGCTGTGGATGTTGAGGAGAACCCTTCTCAGGTGTCACCTGAGGTTTCCAAGTCCATGGCACTTAAGCGGTTCAAGTTCTCGCCTGGAATGTTGATAAAGCAAAGCCAGGATGATGGAAGTGACGAGGTGACATGGAAGATCTCTCCTGTGAATGAGCGGCTTCAAGCAATGACGAAGAAGCATGGCCCAGAGTGGCTTTGTTCCCCAACAATGAAAGCTTCTGAAAAATCTGTGGTATTCTCGAATAGGGTTAGCTTAAAAAAGGTGAAACTGGGTCAAGTCATGGATTCCAATGGAAATGAAATTGATATGACTGACCCAGGTGTGGTAAGAAAAAGACAAAGTCCTTTTCGAACTCCACCATCTTTATCATATTGCCACGAGAAGAATATTGATGGTGTTGATTGCAAATTGGTATCTGACCAGATGGGCTTAAGGCAACACAAAAAGGCATTGCTTGAACTTTTGGATCAAGTAGAAGATGCCATTTCTGTTGAAGAATCAGTATCTAGTGATGGAGAGGCATGTTTATCCAAAGTCCAGTGCATAAATGGTGATGAGATGCCTCTTAGAGTTGATCCTGCATTAAAGATACCAGAGATGGGTCCAACAGAAAAGGTCAATGGGGAATGTTCCAACATTATTTTTCTTGTTTTGGAGGTTTCTGAGAAGCGGGAATATGCTGATTTATCTGGTGCACAGTGTCCTTCTAAGGTACTTCGCTTACTGAATGAGAAAACTGGAGAAGAGCAGGCTGTGTATTTGAGGGATGAGTGGTTTTATTCTGTCATTGCTCCTGGAGATACTATACATGTAATCGGTAAATTTGATGACCAGGGAAAGTGTGATGTAGACCATGACAACAACTTTCTAATTGTTCACCCTGATATACTGGTGTCTGGCACTCGGGTAGCTGCTAGTTTCAGTTGCTCAAGACGAACTGTCCTGGATGAGAGGCTAAAATGCAGTGAACATTCAACTGCAGCATTGATAGGTACCTTGCTGCACCAAATTTTTCAGGCCGGACTTATTAGAGAGATTCCTACAAAAGTTTTCTTGGAGGAGTATGCAAGAATAGTGGTTCAGAAAAATCTTGAGAGCTTGTATGCATGTGGAGTAAATGAAGATGATATGTATAAAACTTTGATTGAGGCAACTCCAAGAATACTAAACTGGATCGTCCTCTTCAAGAATTCACAGGAGTATAGAGGTGCTACTGTTGATTTTGGATCTGATGATGGCTTGAAAAGGGTGAATGTATCTGAGGTAATAGATATTGAGGAAATGGCATGGGCCCCAAAATATGGCTTGAAAGGGATGATTGACGCTTCTCTTCGAATAAAATTTGAATCAAACACCAAGGAAGTGAATGAGATAATCATGCCTTTAGAGTTTAAAACTGGGAAAGGAACTAAAGGCCAGGCAACCATGGAACACACTGCACAGGTGATCTTGTACACTCTCCTTATGTCTGAGAGGTATCTGAAACCTATTGATTCTGGACTTCTCTATTATCTCAATACAGACCATACACAGGGCATTGCAGTTAAAAGATCAGACTTGGTTGGTCTAATTATGCGTCGCAATGAACTTGCAAAAGATATTCTAAAGGCATCAATGATGCAGCAACTGCCTCCAATGTTGCAGAGTCCAAGCATGTGCAAAAGTTGTCGCCATCTTAATGCTTGTACAATCTATCATAAGGCACATGGGGGAAGCATGGAGAGCAGCGGACTGGGGGATTTGTTTGATTCAAATATTAACCACTTGACAACTTCTCATTTTGCTTTCCTTCGTCATTGGGATTGGTTAATCGACTTAGAAGCTAAAGAGATGGAGGTCATGAAGAAAGGCATTTGGCGTTCACATAGTTTAAAAAGAGATCCCTCAACTAGTTGCTTATCTTCTATTGTTCTTGATACTTCAAATAAACACCCACAGAAAAACTCGTTTAAGGACAACAAATTCATTTACCGATTTGTGCGTCAAAATGTACCTAGTTTTCATGTGAAAGAGCATAATGAAGATTCTTTGCCTTCTGTCTCTTCTCCTGCAAATGATTTGGATTGCACACTTAGAAATGGGGATTATGTGATACTTAGCACTGAATCTGGACATCTAGCACTTGCAAGTGGAGTCATAACAGATATCAGTCGCTTCCATGTCTATGTTTGTTTTTCCAAACGCTTAAGGCTTCCTTGGAGCAAAAGATCTTCAGAGGAACAGGATCTCCTTGGTGAGGTCTTTCGGATCAACAAGGATGAGATTGTTACTTCATTTGCAGTTATGAGGTTCAACCTTATACAACTCTTTCTACAAAGCATGCAAGGTTCTCATCTTAGGAAGATGATTGTTGACCTTGAGGTTCCTAGATTTGATGGTGGCTGCATATTCAGTCAAGATCCAGCAATATCTTATATACGTTCTGAAAAGAGTTTGAATAATGATCAACGCCAAGCCATACTCAAGATACTCACAGCAAAGGATTATGCTCTAATTTTAGGAATGCCTGGAACAGGCAAGACATCCACTATGGTGCATGCTGTGAAGGCCTTGTTGATGAGAGGTGCATCCATTTTGCTTACGTCCTACACAAACTCAGCTGTTGATAATTTACTAATCAAATTAAAAGCTCAGAACATAGATTTTGTGCGTATTGGAAGACATGAAGTGGTGCATGAAGAAATTCAAGGGCATTGCTTTTCAGGAATGGACATACATAGTGTTGAAGACATTAAACTAAGATTAGACCAAGTCAGCGTTGTTGCAGTTACTTGTTTGGGGATAACTAATCCCTTGCTTGCCAACAAGAGGTTTGACATATGCATCATGGATGAAGCTGGGCAGACCACCCTCCCAGTATCCTTGGGGCCCTTGATGTTTGCTTCAATATTTGTCCTTGTTGGAGATCATTATCAACTACCTCCACTTGTTCAGAGTGCTGAGGCTCGGGAAAATGGAATGGGAATAAGCCTGTTTTGCAGGCTCTCAGAAGCACACCCTCAAGCAATTTCGGCATTGCAGAGCCAGTACCGCATGTGTCAAAGCATTATGGCACTATCAAATGCCTTGATATATGGTAACAGACTGCGTTGTGGTTCCTCACAAATAGCGAATGCAAGGCTCAAGTTTTCAAGTTCAAATTCTATTTCATCATGGCTAAAGGAGGCTTTGGATCCTGAAAGACCGGTTATATTTATTAATACAGATATGTTGTCAGCTTTTGAGGCAAAGGATCACAAGACTGTTAATAACCCAATTGAAGCTTGCATCATTTCAGAGGTGGCAGAAGAATTGGTCAACAATGGCATTGAAGGGGAAGATATTGGCATCATTACACCCTATAACTCACAGGCAAATCTCATCCGACATACTGTTTCCACGACCTCTGTGGAGATAAATACTATTGATAAATACCAGGGAAGGGATAAAGACTGCATTCTGGTGTCATTTGTAAGGTCCAGTGAAAATCCAAGGAATTGTACTTCATCGCTGCTTGGTGACTGGCATAGGATTAACGTGGCGCTTACACGTGCCAAGAGGAAGTTAATCATGGTAGGTTCATTTAGAACCCTCTCTAAAGTACCACTGTTGAGGCTTCTCATTGAGAAGGTTGAGGAGCAGTCTGGCAGATTAAATGTTTCCTTGAAGGATATCAACTACAAGGGAGAGCTGAAAAGATGTTCCCAGTTGAGATGA 4317 0.4225 MAPRKKPSSKSNQNQPNSQPSKFGIQHFFLRHSQSSTSRPNDAVCTPGPNPPSQSAPPLQNPTAACPENVLISATAARSNAVSAPKPPPLESGLALQNPKTAPSLGIADENDAVSASGNPRKALNLDSTDPKNGLSTSQNPSNAGRIESVSNFGNALNSGTADSNNAVSTRKNPRNAFPSASTSNSRKTDPNNPSQSTPPGNIPAMAVDVEENPSQVSPEVSKSMALKRFKFSPGMLIKQSQDDGSDEVTWKISPVNERLQAMTKKHGPEWLCSPTMKASEKSVVFSNRVSLKKVKLGQVMDSNGNEIDMTDPGVVRKRQSPFRTPPSLSYCHEKNIDGVDCKLVSDQMGLRQHKKALLELLDQVEDAISVEESVSSDGEACLSKVQCINGDEMPLRVDPALKIPEMGPTEKVNGECSNIIFLVLEVSEKREYADLSGAQCPSKVLRLLNEKTGEEQAVYLRDEWFYSVIAPGDTIHVIGKFDDQGKCDVDHDNNFLIVHPDILVSGTRVAASFSCSRRTVLDERLKCSEHSTAALIGTLLHQIFQAGLIREIPTKVFLEEYARIVVQKNLESLYACGVNEDDMYKTLIEATPRILNWIVLFKNSQEYRGATVDFGSDDGLKRVNVSEVIDIEEMAWAPKYGLKGMIDASLRIKFESNTKEVNEIIMPLEFKTGKGTKGQATMEHTAQVILYTLLMSERYLKPIDSGLLYYLNTDHTQGIAVKRSDLVGLIMRRNELAKDILKASMMQQLPPMLQSPSMCKSCRHLNACTIYHKAHGGSMESSGLGDLFDSNINHLTTSHFAFLRHWDWLIDLEAKEMEVMKKGIWRSHSLKRDPSTSCLSSIVLDTSNKHPQKNSFKDNKFIYRFVRQNVPSFHVKEHNEDSLPSVSSPANDLDCTLRNGDYVILSTESGHLALASGVITDISRFHVYVCFSKRLRLPWSKRSSEEQDLLGEVFRINKDEIVTSFAVMRFNLIQLFLQSMQGSHLRKMIVDLEVPRFDGGCIFSQDPAISYIRSEKSLNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKAQNIDFVRIGRHEVVHEEIQGHCFSGMDIHSVEDIKLRLDQVSVVAVTCLGITNPLLANKRFDICIMDEAGQTTLPVSLGPLMFASIFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPQAISALQSQYRMCQSIMALSNALIYGNRLRCGSSQIANARLKFSSSNSISSWLKEALDPERPVIFINTDMLSAFEAKDHKTVNNPIEACIISEVAEELVNNGIEGEDIGIITPYNSQANLIRHTVSTTSVEINTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKRKLIMVGSFRTLSKVPLLRLLIEKVEEQSGRLNVSLKDINYKGELKRCSQLR* 1439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0338 1438 CDD DNA2_N-like 506 738 - -
Vvi15g0338 1438 Pfam AAA domain 1196 1394 IPR041679 -
Vvi15g0338 1438 CDD DEXXQc_DNA2 1018 1218 IPR026851 GO:0017116
Vvi15g0338 1438 MobiDBLite consensus disorder prediction 1 66 - -
Vvi15g0338 1438 FunFam DNA replication helicase Dna2 616 770 - -
Vvi15g0338 1438 MobiDBLite consensus disorder prediction 1 44 - -
Vvi15g0338 1438 Pfam AAA domain 1019 1107 IPR041677 GO:0004386
Vvi15g0338 1438 Pfam AAA domain 1119 1186 IPR041677 GO:0004386
Vvi15g0338 1438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1404 IPR027417 -
Vvi15g0338 1438 Gene3D - 897 960 - -
Vvi15g0338 1438 FunFam DNA replication helicase 1217 1429 - -
Vvi15g0338 1438 PANTHER DNA2/NAM7 HELICASE FAMILY 283 1410 IPR045055 -
Vvi15g0338 1438 MobiDBLite consensus disorder prediction 121 202 - -
Vvi15g0338 1438 FunFam DNA replication helicase Dna2 953 1216 - -
Vvi15g0338 1438 Pfam DNA replication factor Dna2 451 652 IPR014808 -
Vvi15g0338 1438 CDD SF1_C_Upf1 1219 1412 IPR047187 -
Vvi15g0338 1438 Gene3D - 1217 1428 IPR027417 -
Vvi15g0338 1438 MobiDBLite consensus disorder prediction 78 206 - -
Vvi15g0338 1438 Gene3D - 506 770 IPR011604 -
Vvi15g0338 1438 Gene3D - 1114 1216 IPR027417 -
Vvi15g0338 1438 Gene3D - 961 1107 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0338 Vvi-Chr15 9585477 9631231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0338 131 1160 Core DNA Replication Machinery Family AT1G08840 56.468 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0338 K10742 - vvi:100247844 2799.62