Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0310 ATGTGCAGAAAGATCACTAGGCCAAGAAGAATGTATGTGTACGAAGAGAATGCTTGTTTTGATGGCACAAAGTCAGTGGCAGAAGGAGATGATGAGGGGTTTTCCCAAAGTGTTGCGCCACCACCCACCAACAACAGCTTTGAGGACAGCACCAACATGAGGGTTTCCATGGAGGATGCCTCGGCCACCATGGAAATTGAGCTCCACCAGCAGCTGGCCTTTGACATGGACCAACAATGCTATAACAGCAACAACGACGGCAATGATTCAAATCAGGTATTCTCATATGAGATGCAGGAGATGGGGTTCAATCATCATCAGCAGCAGCAAGAGGACCCATTGCTGTTGCAGCAGCATCAGGCTGAAATGCAGAATGCCCACCAGAATTTCAGTGCTGCATACCCTCCAACACCAGACCTTCTCAATCTATTCCACTTGCCCAGGTGCACGCCCTCATCTCTCCTCCCAAACTCATCCATCTCCTTCACAAACCCGGACAGCTCGGCCACGGCGGCATCTGGCATCTTGTACGATCCTTTGTTCCATTTGAACCTCCCCCCACAGCCTCCTGTGTTCAGGGAGCTGTTTCAGTCTCTCCCACATGGCTACAACTTGCCAGCCTCAAGGGTTGGGTCTTTGTTTGGTGGTGGGATGGATGAGAGAGAGGCAAGTGGAGGTGGGTACGGAGATGGGGACGATCATAGGCAGTTTGATAATGGGGTCCTCAAGTTCACAAGGGACATGGCCTGTATTGGTAAAGGCAGGGAGGGCAAAGGCACCAAATCCTTTGCTACTGAGAAGCAAAGAAGAGAGCACTTGAATGATAAGTACAATGCTCTGAGGAGTTTGGTCCCAAACCCCACCAAGAGTGATAGAGCATCTGTGGTGGGAGATGCGATTGAGTACATCAGAGAGCTTCTGCGAACAGTGAATGAGCTGAAGCTGCTGGTGGAGAAAAAGAGATGTGGGAGAGAGAGGAGTAAGAGGCACAAGACAGAGGATGAGTCCACAGGCGATGTAAAGAGCAGCAGCAGCATTAAGCCAGAGCCTGACCAGTCCTACAATGAATCCCTCAGGAGCTCCTGGCTCCAGAGAAAATCCAAAGACACGGAGGTGGATGTTCGGATCATAGACGACGAAGTCACCATCAAACTTGTCCAGAGAAAGAAGATCAACTGCTTGCTCTTTGTGTCCAAGATCCTTGATGAGCTTCAACTGGACCTCCACCATGTTGCAGGCGGCCATGTTGGTGATTATTACAGCTTTCTCTTCAACACCAAGATATATGAAGGCTCCTCAGTCTATGCCAGTGCAATAGCCAACAAACTCATCGAGGTGGTGGACAGACAGTATGCAGCCATACCCATTCCCATTCCCATTCCACCCACTAGTAGCTTTTAG 1401 0.4996 MCRKITRPRRMYVYEENACFDGTKSVAEGDDEGFSQSVAPPPTNNSFEDSTNMRVSMEDASATMEIELHQQLAFDMDQQCYNSNNDGNDSNQVFSYEMQEMGFNHHQQQQEDPLLLQQHQAEMQNAHQNFSAAYPPTPDLLNLFHLPRCTPSSLLPNSSISFTNPDSSATAASGILYDPLFHLNLPPQPPVFRELFQSLPHGYNLPASRVGSLFGGGMDEREASGGGYGDGDDHRQFDNGVLKFTRDMACIGKGREGKGTKSFATEKQRREHLNDKYNALRSLVPNPTKSDRASVVGDAIEYIRELLRTVNELKLLVEKKRCGRERSKRHKTEDESTGDVKSSSSIKPEPDQSYNESLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKINCLLFVSKILDELQLDLHHVAGGHVGDYYSFLFNTKIYEGSSVYASAIANKLIEVVDRQYAAIPIPIPIPPTSSF* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0310 466 MobiDBLite consensus disorder prediction 341 360 - -
Vvi15g0310 466 Pfam Helix-loop-helix DNA-binding domain 262 306 IPR011598 GO:0046983
Vvi15g0310 466 MobiDBLite consensus disorder prediction 29 49 - -
Vvi15g0310 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Vvi15g0310 466 SMART finulus 263 312 IPR011598 GO:0046983
Vvi15g0310 466 MobiDBLite consensus disorder prediction 324 360 - -
Vvi15g0310 466 CDD bHLH_AtMYC1_like 263 328 IPR045896 -
Vvi15g0310 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 323 IPR036638 GO:0046983
Vvi15g0310 466 Gene3D - 254 321 IPR036638 GO:0046983
Vvi15g0310 466 PANTHER TRANSCRIPTION FACTOR BHLH91 12 455 IPR045895 GO:0006355|GO:0048658
Vvi15g0310 466 MobiDBLite consensus disorder prediction 324 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0310 Vvi-Chr15 8617002 8618617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0310 13 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 42.316 1.68e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi15g0310 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0310 - - vvi:100253657 885.174