Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0300 ATGGAGATTATCGACGACATCCTTAAAAAATTGAATCCTAAGGTTTTATATGTCAATGAGGACATATGTGGAAAGGAACTTCGCTTGAAAGAATTGAAATCATTGCTAAGTATTGAATTGATCGATGATGTTCGCATGATTGGGATTTATGGGATTGGTGGAATCGGTAAAACTACCATTGCTAAGATGGTTTACAATGATGTCTTATGTCACTTCAAAGGTAGTAGCTTTCTTGAAGATGTCAAAGAGAGATCCAAATGTCATCATGGTAGACTTCAATTGCTTCAAGAGTTCCTTCATGGTACATTGATGGTAAAAGATCTAAAATTAAGTAATATTGATGAAGGAATCAATATGATAAAGAATAGGCTCTGTCGAAAAAGGATTCTTCTTATTCTTGATGATGTAGACCATTTGGATCAATTGAAGTTATTGGTTGGAAGTTGTGAATGGTTTGGTCCAGGAAGTAGAATCATCATAACCACTAGAGATAAACATTTGTTAAACGTGCATAGAGTGGATGCAGTATATGAGGTTAAAGAGTTAGATCACAAAGAAGCTATTCAACTCTTCAGTAGGCATGCCTTTAAACAAAACATTCCTCCAAAAAATTATGAAGACCTCTCGAATTGTGTGATAAATTATGCTAAGGGTCTTCCATTGGCTCTTAAAGTTCTAGGTTCTTTTCTTTATGGCATGACAATAGATCAATGGAAGAGTGCTTTAGATAAATTGAAGGGAAAGCCTAACATGGAAATACACAATGTGCTTAGAATAAGTTTTGATGGACTCGACCACACAGAAAAACAAATATTTCTTGATATTGCCTGCTTTTTTAAAGGAGAAGATAAAGATTTTATTTCAAGAATATTAGATGGTTGTAATTTCTTTGCAAATATAGGGTTGAAAATTCTTTGTGATAGGTGTCTCATAACAATTTCAAATAGTAAGATTCATATGCATGATTTAATACAACAAATGGGTCAAGAAATTGTTCGTGAAAAATATCCCGATGACCCTAATAAATGGAGCAGATTGTGGGATCCAGATGATATCTATCGTGCGTTTTTAAGAAAAGAGGGTCTTGAAAAGTTAAAGTTCATCAATCTAAGTCACTCAGAGAAGCTCACTAAAATATCAAAATTCTCAGGAATGCCAAATCTAGAGAGGCTAAATCTTGAAGGTTGTACAAGTTTGCGAAAAGTTCACTCATCCCTTGGAGTTCTAAAGAAGCTTACTTCCTTACAACTGAAAGACTGCCAAAAACTTGAAAGTTTCCCAAGCAGCATTGAGTTGGAATCCCTTGAAGTTCTTGATATCTCTGGTTGCTCCAACTTTGAGAAATTTCCAGAGATTCATGGGAATATGAGACATTTGAGGAAGATCTATTTAAATCAGAGTGGTATTAAAGAACTTCCAACCAGCATTGAATTCTTGGAGTCTCTTGAAATGCTTCAACTAGCAAATTGCTCAAACTTTGAGAAATTTCCAGAGATCCAGAGGGATATGAAAAGTCTACACTGGCTTGTGTTAGGTGGGACTGCGATTAAAGAGCTACCCTCCTCGATATATCATCTAACAGGACTTCGGGAGCTCAGCCTGTATAGGTGCAAAAACTTGAGGAGACTTCCAAGCAGTATTTGTAGGTTGGAATTTCTTCATGGTATCTATCTCCATGGCTGCTCAAATCTGGAGGCCTTTCCGGATATCATCAAGGACATGGAAAATATAGGGAGACTTGAATTAATGGGAACGTCTCTAAAAGAGCTACCACCATCAATTGAACATCTAAAAGGTCTTGAAGAGTTGGATTTGACAAATTGTGAAAACCTTGTGACTCTTCCAAGCAGCATTTGCAATATCAGATCTCTCGAACGTCTTGTTTTGCAAAATTGTTCAAAACTCCAGGAATTGCCAAAGAACCCGATGACCCTGCAATGTTCAGATATGATTGGCTTATGTTCCTTAATGGATCTAAATCTAAGTGGCTGCAACCTGATGGGAGGAGCTATACCCAGTGATTTATGGTGCCTATCCTCATTGAGACGATTAAATCTAAGTGGAAGCAATATCAGATGCATACCATCAGGCATCAGTCAGCTGAGAATTCTTCAGTTGAATCACTGCAAGATGCTTGAATCAATTACCGAGCTTCCATCAAGTTTACGAGTCTTAGATGCCCACGACTGCACCCGCCTGGACACTTTATCAAGTCTATCTAGCCTTCTCCAGTGTTCTTTGTTCAGTTGCTTCAAATCAGCAATTCAGGTATGA 2274 0.372 MEIIDDILKKLNPKVLYVNEDICGKELRLKELKSLLSIELIDDVRMIGIYGIGGIGKTTIAKMVYNDVLCHFKGSSFLEDVKERSKCHHGRLQLLQEFLHGTLMVKDLKLSNIDEGINMIKNRLCRKRILLILDDVDHLDQLKLLVGSCEWFGPGSRIIITTRDKHLLNVHRVDAVYEVKELDHKEAIQLFSRHAFKQNIPPKNYEDLSNCVINYAKGLPLALKVLGSFLYGMTIDQWKSALDKLKGKPNMEIHNVLRISFDGLDHTEKQIFLDIACFFKGEDKDFISRILDGCNFFANIGLKILCDRCLITISNSKIHMHDLIQQMGQEIVREKYPDDPNKWSRLWDPDDIYRAFLRKEGLEKLKFINLSHSEKLTKISKFSGMPNLERLNLEGCTSLRKVHSSLGVLKKLTSLQLKDCQKLESFPSSIELESLEVLDISGCSNFEKFPEIHGNMRHLRKIYLNQSGIKELPTSIEFLESLEMLQLANCSNFEKFPEIQRDMKSLHWLVLGGTAIKELPSSIYHLTGLRELSLYRCKNLRRLPSSICRLEFLHGIYLHGCSNLEAFPDIIKDMENIGRLELMGTSLKELPPSIEHLKGLEELDLTNCENLVTLPSSICNIRSLERLVLQNCSKLQELPKNPMTLQCSDMIGLCSLMDLNLSGCNLMGGAIPSDLWCLSSLRRLNLSGSNIRCIPSGISQLRILQLNHCKMLESITELPSSLRVLDAHDCTRLDTLSSLSSLLQCSLFSCFKSAIQV* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0300 757 PRINTS Disease resistance protein signature 216 230 - -
Vvi15g0300 757 PRINTS Disease resistance protein signature 430 446 - -
Vvi15g0300 757 PRINTS Disease resistance protein signature 46 61 - -
Vvi15g0300 757 PRINTS Disease resistance protein signature 123 137 - -
Vvi15g0300 757 Gene3D - 8 176 IPR027417 -
Vvi15g0300 757 FunFam Disease resistance protein (TIR-NBS-LRR class) 183 265 - -
Vvi15g0300 757 SMART LRR_typ_2 526 550 IPR003591 -
Vvi15g0300 757 SMART LRR_typ_2 503 525 IPR003591 -
Vvi15g0300 757 SMART LRR_typ_2 597 621 IPR003591 -
Vvi15g0300 757 SMART LRR_typ_2 678 701 IPR003591 -
Vvi15g0300 757 SMART LRR_typ_2 456 479 IPR003591 -
Vvi15g0300 757 SUPERFAMILY L domain-like 641 749 - -
Vvi15g0300 757 Gene3D Ribonuclease Inhibitor 454 619 IPR032675 -
Vvi15g0300 757 Gene3D Ribonuclease Inhibitor 340 453 IPR032675 -
Vvi15g0300 757 SUPERFAMILY L domain-like 320 640 - -
Vvi15g0300 757 Gene3D Ribonuclease Inhibitor 620 756 IPR032675 -
Vvi15g0300 757 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 364 499 IPR044974 GO:0006952
Vvi15g0300 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 275 IPR027417 -
Vvi15g0300 757 Pfam NB-ARC domain 42 250 IPR002182 GO:0043531
Vvi15g0300 757 Gene3D - 181 265 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0300 Vvi-Chr15 8463908 8466739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0300 455 748 WRKY Transcription Factor Family AT4G12020 25.000 5.58e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0300 - - vvi:100250170 830.091