Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0298 ATGGAGGATCAGAAGCAGCCCCCAGACCAAGTTGTGGTGGTGATAGACCAGCCCAAAGCGCCTCCAACCACTCTCCGGCGTCTCAACTACCCTAAACCCAAAGCCCGGTTCGCCGAGACCAACTACCCGATCCCACCAAAGTCTGAAGAGCTCGAACCCTTAAACCCCTACGAGGACTCATCGTCGGATGACGATGATGAGTGGTTTGATGATGTAGACAAGGAAGACGAAGAAGATGGCAAGTATCGCGAGCAAGCTAGGAAGAGGAGGAGGATCAACCGAAGAGCCTTGATCGAGTGGGTGCTGTTCTGCACGATCATGACCGGTTTGATTTGCTCTCTCACCCTCAAGTCTCTGAAGGATGAGGTGAAATGGGGGTTGAAGATATGGAAATGGTGCCTCATGGTGATGCTGCTTTTCTGCGGCCGCCTCGTCTCCGGTTGGGTGGTGGGGTTCCTGGTCTTCATCATCGAGCGCAACTTCATGCTCCGAGAAAAGGTTCTGTATTTCGTCTATGGCCTCCGGAAGAGCTTCCAGAACTGCGTGTGGCTGGGCCTGGTGTTGCTGGCGTGGATGATCATGTTCCCCAACGTCCACAAGCACAACAAGGTCTTACAGAAGGCCTTCAGGGCACTGGTGGCGGTGCTGATCGCGGCCACCATCTGGCTCCTAAAGATCGTAATGGTCAAGGTGCTGGCCTCCTCCTTCCACGTCGCGACCTTCTTTGATCGGATGAAGGAGAGCGTGTTCCACCACTACGTGCTGGAGGCGCTCTCGGGTCCGCCGCTGGACGAGGAGGAGCGGGATAGGCCGAAGCGGCGGGTGCTGATGGCGTCCCAGTCATTGCCGGCGAAACTGAGGGATGGGCCGCCGAAGACGGTAACCCAGACAAAGTCGTCGAGGAAAATAGACATGAAGAAGCTGAGGAGGCTGAGCAGAAGGGCGTCGGCGTGGAGCGTGAAGCGGCTGGTGAGCTACGTGAGGTCGTCGGGGCTGTCGACGATATCGAGGACGGTGGATGATTTTGGGAAGGCGGAGTCGGAGATCACCAGCGAATGGGAAGCCAGAACATCCGCTCAAAGGATATTCAAGAATGTGGCCAAGCCTCATGCCAAATTCATAGAAGAGGAAGACCTACTGAGATTCTTAACGAGTGATGAGGTTTGCACCATATTACCTCTATTTGAAGGGGCTGTTGAGACCTCAAGGATCACCAAGTCTTCTTTCAGAAATTGGGTGGTACAAGCATACGTAGAGAGGAAATCTTTAGCTCATTCTCTGAATGATACAAAGACTGCAGTCCACCAACTTCACAAGATAGCGAGTGCAATTGTGATAGTAGTAATAGTAGTGGTATCTCTTCTGGTAATGGGCTTGGCAACCAGCAAAGTCATACTTGTGGTTACTTCCCAGCTGCTCCTCGCGGGTTTTGTCTTCCAAAACAGTTGCAAAACCGTCTTCGAATCCATCATTTTCGTCTTTGTCATGCATCCATTCGACGTTGGTGATCGTTGTGTTATCGATGGTGTTCAGATGATTGTAGAAGAGATGAACATTTTGTCGACGGTGTTTCTCCGATTTGATAGTGAGAAGATATATTTTCCCAACTCGGTTCTTCTCACCAAGCCCATTAGCAATTTCAGAAGAAGTCCCGACATGGCTGATATGATTGATTTCGTCATTGATTTCTCCACTCCTTTGGACACCATTAATAATCTTAAGAAGGCTATACAAACGTACATTGAGGGCAAGCCAAAGTATTGGAACCAGAAGCACACAGTGATAGTGAAGGAGATTGAAAACATGAACAAGCTGAAGATGTGTTTGTGTGTTACGCATACGATGAACCATCAAAATTTTGGTGAAAAGAATCTGCGAAAAACAGAGCTCCTTTTCGAGTTGAAAAGGATTTTTGAGAGCCTTGGCATCAAGTACCATTTGCTTCCTCAAGAGGTTCATCTCACTCAAGTTAACATGCCTATGCAAGCTTAG 1992 0.4975 MEDQKQPPDQVVVVIDQPKAPPTTLRRLNYPKPKARFAETNYPIPPKSEELEPLNPYEDSSSDDDDEWFDDVDKEDEEDGKYREQARKRRRINRRALIEWVLFCTIMTGLICSLTLKSLKDEVKWGLKIWKWCLMVMLLFCGRLVSGWVVGFLVFIIERNFMLREKVLYFVYGLRKSFQNCVWLGLVLLAWMIMFPNVHKHNKVLQKAFRALVAVLIAATIWLLKIVMVKVLASSFHVATFFDRMKESVFHHYVLEALSGPPLDEEERDRPKRRVLMASQSLPAKLRDGPPKTVTQTKSSRKIDMKKLRRLSRRASAWSVKRLVSYVRSSGLSTISRTVDDFGKAESEITSEWEARTSAQRIFKNVAKPHAKFIEEEDLLRFLTSDEVCTILPLFEGAVETSRITKSSFRNWVVQAYVERKSLAHSLNDTKTAVHQLHKIASAIVIVVIVVVSLLVMGLATSKVILVVTSQLLLAGFVFQNSCKTVFESIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILSTVFLRFDSEKIYFPNSVLLTKPISNFRRSPDMADMIDFVIDFSTPLDTINNLKKAIQTYIEGKPKYWNQKHTVIVKEIENMNKLKMCLCVTHTMNHQNFGEKNLRKTELLFELKRIFESLGIKYHLLPQEVHLTQVNMPMQA* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0298 663 Gene3D - 498 547 IPR023408 -
Vvi15g0298 663 MobiDBLite consensus disorder prediction 1 85 - -
Vvi15g0298 663 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 28 659 IPR016688 -
Vvi15g0298 663 FunFam Predicted mechanosensitive ion channel 498 547 - -
Vvi15g0298 663 Pfam Mechanosensitive ion channel 439 644 IPR006685 GO:0016020|GO:0055085
Vvi15g0298 663 SUPERFAMILY Sm-like ribonucleoproteins 488 547 IPR010920 -
Vvi15g0298 663 MobiDBLite consensus disorder prediction 56 75 - -
Vvi15g0298 663 PIRSF Memb_At2g17000 23 663 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0298 Vvi-Chr15 8452018 8458037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0298 4 658 Mechanosensitive Ion Channel Family AT5G12080 44.269 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0298 K22048 - vvi:100260421 1233.78