Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0284 ATGGCACGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACAGGAGCTCTCAATACTGTGTGATGCCGAGATAGCGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGTGTGAGCCAGGTGATTGGAAGGCACAATCAGCATCCACAGACTCCAGGGAAACCAGAACCACCATCTCTGGAGCTGCAGCTGGAGAACAGCACCTGTGCAGCCTTGAGCAAAGAAATTGCCCAGCAGACTCAGAGGCTGAGGCAAATGAAAGGAGAAGAGCTCCAGGTATTAAAAATAGAAGAATTGACTGAACTAGAGGAATTACTTGAAGCTGGTCTGTGCAACGTCGTGGAAGAAAAGGAAGAAAGAATTCGAACAGAGATCAGTGATCTCCAGAGAAAGGGAGACCTACTGCAGGAAGAGAATGAAAGGTTGAGAAAGGAGATGGAGAATATTTTTGAAGCACAACCTCTTCTTTAA 543 0.4567 MARQKIQIKKIDNTAARQVTFSKRRRGLFKKAQELSILCDAEIALIVFSAAGKLFEYSSSSVSQVIGRHNQHPQTPGKPEPPSLELQLENSTCAALSKEIAQQTQRLRQMKGEELQVLKIEELTELEELLEAGLCNVVEEKEERIRTEISDLQRKGDLLQEENERLRKEMENIFEAQPLL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0284 180 Coils Coil 93 113 - -
Vvi15g0284 180 Coils Coil 123 176 - -
Vvi15g0284 180 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g0284 180 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vvi15g0284 180 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi15g0284 180 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Vvi15g0284 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi15g0284 180 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g0284 180 FunFam Transcription factor, MADS-box 13 83 - -
Vvi15g0284 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi15g0284 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 157 - -
Vvi15g0284 180 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Vvi15g0284 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g0284 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g0284 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi15g0284 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0284 Vvi-Chr15 8056559 8087084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0284 1 169 MADS-box Gene Family AT2G22540 62.941 6.64e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi15g0284 K-box 8.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0284 - - vvi:100265532 335.495