Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0270 ATGGATTTGGGCAGTGCGGAGAGAGCTGATGAGCTACTTCAAGCCCAAGCTCAGGTAGTGAACCACGTGTTCAACTTCATGAACTCCATGGCTCTGAAATGTGCAATAGACCTAGCCATACCAGATGTCATCCACAGCCATGGCCAGCCCATGCTTCTTTCTCAACTGGTCACTGCCCTGTCTGTCCAACCATCTAAAGCACCATGCCTCCACCGCCTCATGCGGCTTCTTGTTCATTCTGGCTTCTTTTCTCAGCAACAAGTAATCCATAACAATGAGCAAGAAGAAGGGTATTCCCTGACTTCTGCCTCTCGGTTCCTACTAAAAGATGAGCCCCTGACCGGACTGCCACTATCACTTCTTCATCTTAATCCAGTACTTACAGCTCCATGGCATTTCTTGAGTGGTTGGTTCCGGAATGGTGATCCAACCCCATTTTATACTGCACACGGCAAGCCATATTGGGATTATACAGCCCAAGAACCAGACTTTAATGATCTCTTTAATGAGGCCATGGCAAGCGACTCCCGGATTATTGCAAGCGTGCTGATTACCAAGTGTAAGGAGCAGTTCAAAGGGCTGTTCTCGTTGGTCGATGTTGGGGCAGGCACTGGAACAATGACCAAAGCCATTGCCAAAGCATTCCCTCATTTGAAGTGCATTGTATTTGATCAACCACACGTAGTCGCTGATTTACAGGGAGGTGGAAACTTGGAGGTTGTAGGAGGGGATATGTTTGAGACAATTCCTTCTGCGAATGCAGTCATACTCAAGTGGATCCTACATAACTGGAGCGATGAGGAATGTGTGAAGATACTGAAGAAATGCAAAGAAGCAATTCCAACTAAGGACAAGGGAGGGAAGCTGATGATCATCGACATGGTAATGGAGAACAACAAAGGAGACGACCAAGCAGTCGAAACCCAGCTATTTTGGGACATGCTTATGATGACTGTGCTCACAGGTAAACAGAGAAATGAGAACGAATGGAAGAAGCTCTTTGTGACTGCAGGCTTCACTCACTATAAGATAAGCGCAGTGTTAGGTTTCAGGTCCCTCATTGAGGTTTATCCGTGA 1077 0.468 MDLGSAERADELLQAQAQVVNHVFNFMNSMALKCAIDLAIPDVIHSHGQPMLLSQLVTALSVQPSKAPCLHRLMRLLVHSGFFSQQQVIHNNEQEEGYSLTSASRFLLKDEPLTGLPLSLLHLNPVLTAPWHFLSGWFRNGDPTPFYTAHGKPYWDYTAQEPDFNDLFNEAMASDSRIIASVLITKCKEQFKGLFSLVDVGAGTGTMTKAIAKAFPHLKCIVFDQPHVVADLQGGGNLEVVGGDMFETIPSANAVILKWILHNWSDEECVKILKKCKEAIPTKDKGGKLMIIDMVMENNKGDDQAVETQLFWDMLMMTVLTGKQRNENEWKKLFVTAGFTHYKISAVLGFRSLIEVYP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0270 358 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vvi15g0270 358 Pfam O-methyltransferase domain 131 339 IPR001077 GO:0008171
Vvi15g0270 358 PANTHER O-METHYLTRANSFERASE 12 343 IPR016461 GO:0008168
Vvi15g0270 358 CDD AdoMet_MTases 197 296 - -
Vvi15g0270 358 Gene3D - 4 107 IPR036388 -
Vvi15g0270 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vvi15g0270 358 FunFam O-methyltransferase ZRP4 109 358 - -
Vvi15g0270 358 FunFam Coniferyl alcohol 9-O-methyltransferase 3 107 - -
Vvi15g0270 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 357 IPR029063 -
Vvi15g0270 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Vvi15g0270 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Vvi15g0270 358 SUPERFAMILY "Winged helix" DNA-binding domain 9 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0270 Vvi-Chr15 7490221 7491384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0270 30 344 Monolignol Biosynthesis Gene Families AT5G54160 33.229 2.70e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0270 - K16040 vvi:100251741 716.072