Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0263 ATGGGACACCGTCTGGAGCTTGCAGGCGATACAGTAGTTTGGACTGTCGCGTCGGCAGTGACGACCCACCCCACTGTTGTCATCGCTATAACTATTACCATGGCTTTTGGTTATTATCGACAGAAGGTATTAAAGCGCGATCATGTGTTTTGCTACAAGCCCAATCGGACCCATCAGCAAACATACTGTGTTGTGTGCCTCTACGACGCTGTTGAGGGCGAGAGGCTCCGCCGGCTGCCCGATTGCAAGCACTGCTTCCATGTGGGCTGCATCGACGCCTGGTTTCAGGCCCATTCGACCTGCCCACTATGCAGAAGCCAGGTCTCCCTTCCTCATCGCCGTCAACAGACTCTCTTCTCTCATTTTGTTTCATTGTTGAAGCTTATTGCCGACAAAACTGGGAACCCTCTTTGCCTTGAGATCCCCTTGGCTTTATGTGATAGTTTAGGGTACATTCCTTAA 462 0.5108 MGHRLELAGDTVVWTVASAVTTHPTVVIAITITMAFGYYRQKVLKRDHVFCYKPNRTHQQTYCVVCLYDAVEGERLRRLPDCKHCFHVGCIDAWFQAHSTCPLCRSQVSLPHRRQQTLFSHFVSLLKLIADKTGNPLCLEIPLALCDSLGYIP* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0263 153 Pfam Ring finger domain 62 105 IPR001841 -
Vvi15g0263 153 CDD RING-H2_EL5-like 63 105 - -
Vvi15g0263 153 SMART ring_2 63 104 IPR001841 -
Vvi15g0263 153 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 40 109 IPR044675 -
Vvi15g0263 153 SUPERFAMILY RING/U-box 44 113 - -
Vvi15g0263 153 ProSiteProfiles Zinc finger RING-type profile. 63 105 IPR001841 -
Vvi15g0263 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0263 Vvi-Chr15 7337500 7337961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0263 42 108 C3H Transcription Factor Family AT1G53820 52.239 1.48e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0263 - - ghi:107961100 97.8265