Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0248 ATGGTTCAGAGGAAAGGATCAACTAGGGTTTCGGAAGATGCAGAAGAGCTGGTCCGCGTCCCTCTTCAGGCCATTCTGTTGGCGGACAGCTTCGCCCAGAAGTTCCGCCCCATCACCCTTGAACGCCCCAAAGTACTGCTGCCATTGGTGAATGTCCCCATGATAGACTACACTTTAGCTTGGCTTGAGTCTGCTGGGATTGAGGAGGTTTTTGTCTTTTGCTGTGCGCATTCGAAACAGGTTATTAACTATTTGGAGAATTCCCATTGGGTTTCTTTGCCGCACTTTGAGGTCACCACAATAGAGTCACACAATTCTGTCAGTGCGGGCGATGCTCTGCGTCTGATTTATGAGCGGCATGTGATACATGGAGACTTCGTCCTAATTACTGGAGATACAGTAAGCAACATGTCGCTTACACAGGCACTTCAAGAACATAAGGATAGAAGGAAGAAGGATAATAATGCTGTAATGACTATGGTTATTAAACGGTCAAAGCCTTCTCCGATTACTCATCAATCTCGACTTGGTACTGATGAGCTGTTTATGGCAATTGATCCTCACACGAAGCAGCTTCTATATTATGAGGATAAGGCAGACCATTTGAAAGGCACTTTATCTCTTGAGAAAATGTTACTAGCCGACAATCCTTCAATTTCCCTCCACAATGACAAGCAGGATTGCTATATTGACATCTGCTCGCCGGAAGTCCTCAGTATTTTCACTGACAATTTTGATTATCAACACCTGCGGCGTCATTTCATCAAGGGATTGCTTGTCGATGATATTATGGGATACAAAATTTTCACGCATGAAATTCACTCAAATTACGCGGCTAGGATTGATAACTTCAGAAGCTATGACACCATTAGTAAGGATATTATTCAAAGGTGGACATACCCATTGGTACCAGATGTTCAGTTTTTGGGAAATTGCGCAGCTAAACTTGAAAGGCAGGGAATGTACCGAGCATTGGATATCGGGCAATCACGTTCTGCACAGATTGGTCCATTTTCCATCATTGGAAATGGAACCAATATTGGTGATAACACAAAAATTTCAAATTCAGTTATCGGGGAAAGGTGTACTATTGGATCAAACGTTTCAATAGAAGGTTCCTATATATGGGATAATGTTACAATTGAAGATGGCTGCGTGCTAAAACATGCTATAGTATGCAATGATGTAATAATGAAGTCAGGAGCAGTTTTGGAACCTGGTGTTATTTTGTCTTTTAAGGTTGTTATTGGACAAGAATTTGTTGTTCCTGCGTACTCAAAGGTATCTTTACTTCAACAGCCAACAAAGCAAGATAGTGATGAGGAGCTGGAGTATGCTGACCATAACAGTGGGGTTGAAGAAATTCCATGTAACTCTTCATGCTCCATATACTCAAACTAA 1401 0.4197 MVQRKGSTRVSEDAEELVRVPLQAILLADSFAQKFRPITLERPKVLLPLVNVPMIDYTLAWLESAGIEEVFVFCCAHSKQVINYLENSHWVSLPHFEVTTIESHNSVSAGDALRLIYERHVIHGDFVLITGDTVSNMSLTQALQEHKDRRKKDNNAVMTMVIKRSKPSPITHQSRLGTDELFMAIDPHTKQLLYYEDKADHLKGTLSLEKMLLADNPSISLHNDKQDCYIDICSPEVLSIFTDNFDYQHLRRHFIKGLLVDDIMGYKIFTHEIHSNYAARIDNFRSYDTISKDIIQRWTYPLVPDVQFLGNCAAKLERQGMYRALDIGQSRSAQIGPFSIIGNGTNIGDNTKISNSVIGERCTIGSNVSIEGSYIWDNVTIEDGCVLKHAIVCNDVIMKSGAVLEPGVILSFKVVIGQEFVVPAYSKVSLLQQPTKQDSDEELEYADHNSGVEEIPCNSSCSIYSN* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0248 466 FunFam Trimeric LpxA-like enzyme 315 448 - -
Vvi15g0248 466 CDD LbH_eIF2B_epsilon 340 418 - -
Vvi15g0248 466 SUPERFAMILY Trimeric LpxA-like enzymes 267 428 IPR011004 -
Vvi15g0248 466 Gene3D Hexapeptide repeat proteins 328 447 - -
Vvi15g0248 466 Pfam Nucleotidyl transferase 24 166 IPR005835 GO:0009058
Vvi15g0248 466 FunFam Translation initiation factor eIF-2B subunit epsilon 11 302 - -
Vvi15g0248 466 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 8 302 IPR029044 -
Vvi15g0248 466 SUPERFAMILY Nucleotide-diphospho-sugar transferases 20 368 IPR029044 -
Vvi15g0248 466 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 8 459 - -
Vvi15g0248 466 CDD eIF-2B_epsilon_N 22 238 IPR035543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0248 Vvi-Chr15 6848695 6875433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0248 2 451 Eukaryotic Initiation Factors Gene Family AT2G34970 71.772 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0248 K03240 - vvi:100248224 917.146