Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0244 ATGGATTTTCCTGTGGATTTCAGATGCCCCATCTCCATGGAGCTCATGCAAGACCCTGTCACCATATCCACCGGCGTCACCTATGAGCGAAAGAATATCGAAAAATGGCTCTTCTCTTACAACAACAAGACATGCCCAACAACCATGCAGCGCATCAACAGTTTTGATATCACCCCTAATCACACCCTCAAGAGGCTCATCCTCGCATGGCAGAATGAGGAAGCTGCTCGGTCATGTGATTCGCGGCCGGTGCGGTCCCTCAAGCACGATGAATTGGTGTCGCTGCTTGCCACCATGGAGTCCACTCCATTCAAGGTTAATTCTCTCAAGAAACTTCGAGCTATTGTTGGATTAGGCCATGAGGTGAAGGATGATTTCATGAGCTTGTGA 390 0.4897 MDFPVDFRCPISMELMQDPVTISTGVTYERKNIEKWLFSYNNKTCPTTMQRINSFDITPNHTLKRLILAWQNEEAARSCDSRPVRSLKHDELVSLLATMESTPFKVNSLKKLRAIVGLGHEVKDDFMSL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0244 129 PANTHER WDSAM1 PROTEIN 3 117 IPR045185 GO:0061630
Vvi15g0244 129 ProSiteProfiles U-box domain profile. 2 77 IPR003613 GO:0004842|GO:0016567
Vvi15g0244 129 CDD RING-Ubox_PUB 4 56 IPR045210 -
Vvi15g0244 129 SUPERFAMILY RING/U-box 2 74 - -
Vvi15g0244 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Vvi15g0244 129 Pfam U-box domain 4 73 IPR003613 GO:0004842|GO:0016567
Vvi15g0244 129 SMART Ubox_2 6 70 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0244 Vvi-Chr15 6772929 6773395 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0244 1 117 U-box Gene Family AT3G52450 42.500 2.54e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0244 - - vvi:100256860 261.922