Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0241 ATGGCAATGGATTTTCCTGTGGATTTCAGATGCCCCATCTCCATGGAGCTCATGCAAGACCCTGTCACCATATCCACTGGGGTCACCTATGAGCGAAAGAATATCGAAAAATGGCTCTTCTCTTACAACAAGAAGACATGCCCAACAACCATGCAGCGCATCAACAGTTTTGATATCACCCCTAATCACACCCTCAAGAGGCTCATCCTCGCATGGCAGAATGAGGAAGCCGCTCGGTCATGTGAGTCGCGGCCGGTGCGGTCCCTCAAGCACGATGAATTGGTGTCGCTGCTTGCCACCATGGAATCCACTCCATTCAAGGTTAATTCTCTCAAGAAACTTCGTGCCATTGTTGGATTAGGCCATGAGGTGAAGGATGATTTCATGAGCTTGTGA 396 0.4924 MAMDFPVDFRCPISMELMQDPVTISTGVTYERKNIEKWLFSYNKKTCPTTMQRINSFDITPNHTLKRLILAWQNEEAARSCESRPVRSLKHDELVSLLATMESTPFKVNSLKKLRAIVGLGHEVKDDFMSL* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0241 131 CDD RING-Ubox_PUB 6 58 IPR045210 -
Vvi15g0241 131 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Vvi15g0241 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Vvi15g0241 131 PANTHER WDSAM1 PROTEIN 3 119 IPR045185 GO:0061630
Vvi15g0241 131 SUPERFAMILY RING/U-box 3 76 - -
Vvi15g0241 131 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Vvi15g0241 131 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0241 Vvi-Chr15 6577161 6577633 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0241 3 119 U-box Gene Family AT3G52450 44.167 1.77e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0241 - - vvi:100263729 264.618