Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0238 ATGGCTGGTTTCCCCAATGGCTCACCTTCATCATCTCCCTTTCATCTTCACCTTCACCAGCCTCAGCTCAACAACCTTCCGGAACCGCCTGAGCCTGAAAAAAATGAGTGGAACACGGCTCAGTTTCCCTGTGACGGAGATGTGCTCGCTCGCCGTCCTCGAGGTCGACCACCTGGGTCCAAGAACAAGCCTAAGCCACCGGTGGTGATTTCAAGAGAGAGTACAAACACGCTTAGGGCACATATATTGGAGGTTGGTCATGGCTGCGATGTGTTCCACTCAGTGGCGGAGTACACGGAGAAGCGCCGCTGTGGGATCTGTATATTAAGCGGAAGCGGCATGGTCACCGACGTGAGTTTGAGACAGCCGGCGGCGGCTGGGGGTGCAGTGGCTTTTCTGCAGGGGCGGTTCGAGATACTGTCCCTGTCTGGATCGTTTCTGCCGCGGCCAGCGCCCCCCGGTGCAACTAGCCTGACTGTATTTCTGGCCGGCAGCCAGGGACAGGTTGTCGGAGGGAGCGTGGTGGGGGGTTTGACTGCATGTGGGCCGGTGGTTGTCATTGCGGCTTCCTTTACGGACGTGGCTTATGATAGGGTGGGCGTGGATGGAGAGGAGGGGCTCCTGATGCAGCCACCGGAAGATGAGAGTGGCGGTGGTTGTGGTCTTCCCTTGTACAATTTTCCTGGAATCAATAATTTGATGGGAGGCTTAGTTGGGATGCCTGATCCTAATCCTAATTGA 741 0.5641 MAGFPNGSPSSSPFHLHLHQPQLNNLPEPPEPEKNEWNTAQFPCDGDVLARRPRGRPPGSKNKPKPPVVISRESTNTLRAHILEVGHGCDVFHSVAEYTEKRRCGICILSGSGMVTDVSLRQPAAAGGAVAFLQGRFEILSLSGSFLPRPAPPGATSLTVFLAGSQGQVVGGSVVGGLTACGPVVVIAASFTDVAYDRVGVDGEEGLLMQPPEDESGGGCGLPLYNFPGINNLMGGLVGMPDPNPN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0238 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 206 IPR014476 GO:0003680
Vvi15g0238 246 MobiDBLite consensus disorder prediction 1 69 - -
Vvi15g0238 246 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 212 - -
Vvi15g0238 246 Gene3D - 78 208 - -
Vvi15g0238 246 ProSiteProfiles PPC domain profile profile. 75 213 IPR005175 -
Vvi15g0238 246 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 192 IPR005175 -
Vvi15g0238 246 CDD DUF296 79 163 IPR005175 -
Vvi15g0238 246 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0238 Vvi-Chr15 6527268 6528008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0238 49 228 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 64.362 1.74e-68 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0238 - - vvi:100244733 453.366