Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0230 ATGGCTGAAAGTATTGTCACCGTTTTTCTAGAGAAGTTAACTGACCTGCTTTCCCAGGAAGCATTTCTACTCAGCAGAGTGGAAGAGCAGGTGAATCTGTTGAGTATTGACCTCGAATGGATGCGCCATTTTCTCAAAGACGCGGATGCGAAGCGCAGATATGATCCAAGAATCAAGCTCTGGGTGAGTCAGATCAGGGACGTAACCTATGACGCCGAAGATGTCATCGACAGGTTCATGTTCGAGATGAATCACCAACAGCAAGGAAGTCTCAAATGCCTCAAGTTCCTTAAGTTACGATTGGTTCACAAGCTCGAGTCTCGAATCAGAGAGATCAATACCAAGATTGAGAAGATCAAGGCTGCCAAATCAACGTTCGTTGTCGAAACCTTACCAGCTGCAAGCTCGCCCAACGAAGTTGTGCCACATAGAGAGAGGAGGGCTCCGATTGTGGAAGAAGTCAACGTGGTGGGAATTCAAGAGGATGCAAAAAGCGTCAAGCAAAAGCTGCTTAATGGAGAGATGCGGAGAGCTGTGGTGTCCATCGTGGGCATGGGTGGCTTGGGAAAGACTACCCTGGCTAAGAAAGTCTACAATGATAATGATGTCCAGCAATGCTTTGATTGTCATGCTTGGATTTATGTCTCTCAAGAGTATACAATCAGGGAGCTTTTGCTGGGCATTGCTGTTCGTGTTGGGATTCTCTCCGAAGAGGAAAGGAGTAAAATGAACGAGAGCGATTTGGGGAATAGTCTTCGTGATTACCTGACTACCAAGAAGTACTTGATAGTTATGGATGATATGTGGAGAAATGAAGCTTGGGATAGGTTGGGCTTGTATTTTCCTGACTCGGTGAATGGCAGCAGAGTATTGATCACCTCACGCAATAAAGAGATTGGTCTTTATGCTGATCCACAAACCATTCCCCATGAACTTTCTTTTCTGACTGAAGAAGAGAGTTGGGAGCTCTTTCTCAAGAAAATTTTTCTGGCTGGGAGTGCAAATGCTGTTTGCCCCAGAGAACTGGAAGAGTTGGGAAAGAAAATTGTAGCAAATTGTGGGGGTTTGCCCCTTGCAATTGTGGTCTTGGGAGGCCTTCTATCAAGAAAAGAAAAGACACCGCTCTCCTGGCAAAAAGTATTGGACAGCCTAACTTGGCACCTAAATCAAGGTCCAGACTCATGTTTGGGGGTCCTTGCTTTAAGCTACAATGATATGCCGTATTACTTGAAGTCCTGTTTCCTTTACTGTGGTCTTTTCCCAGAAGACTCAGAAATCAGGACAGATAAGTTGATCCGCTTGTGGGTTGCAGAAGGGTTTATACAGAGAAGAGGAGAAGAAATAGGGGAAGATGTCGCGGAAGATCACTTACAGGAATTGGTACATAGAAGCATGATTCAAGTGGCTGCCAGGAGTTTCGATGGAAGAGTGATGTCCTGTCGCATGCACGATCTGCTTCGAGACCTTGCCACTTCTGAGGCCAAAGATACAAAATTTTTTGAGGGATATGGAAGCATGGATTCTACATCCCCTGTTAGTGTTCGTCGACTAACCATTCATCAAGGTAAGAAGACTAATTCTAAACACTTGCATACTTCACGTAGTCTCCGATCTTTCATTTGTTTTTCTGTATGCTTCCAAGAAAACATTTTGAGATCTTTACACAGGCGTGTCAAATTGCTCACTGTACTGGACCTAGAACGCATGCCTATCAATACCATCCCAGAAGGCATAGGAGAACTTATACACCTTAAGTACCTGTGCTTAAAGTATGATAGCCCTTTAGTTCTTTAG 1794 0.4448 MAESIVTVFLEKLTDLLSQEAFLLSRVEEQVNLLSIDLEWMRHFLKDADAKRRYDPRIKLWVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIKAAKSTFVVETLPAASSPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVVSIVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGIAVRVGILSEEERSKMNESDLGNSLRDYLTTKKYLIVMDDMWRNEAWDRLGLYFPDSVNGSRVLITSRNKEIGLYADPQTIPHELSFLTEEESWELFLKKIFLAGSANAVCPRELEELGKKIVANCGGLPLAIVVLGGLLSRKEKTPLSWQKVLDSLTWHLNQGPDSCLGVLALSYNDMPYYLKSCFLYCGLFPEDSEIRTDKLIRLWVAEGFIQRRGEEIGEDVAEDHLQELVHRSMIQVAARSFDGRVMSCRMHDLLRDLATSEAKDTKFFEGYGSMDSTSPVSVRRLTIHQGKKTNSKHLHTSRSLRSFICFSVCFQENILRSLHRRVKLLTVLDLERMPINTIPEGIGELIHLKYLCLKYDSPLVL* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0230 597 FunFam Probable disease resistance protein At5g66910 314 402 - -
Vvi15g0230 597 Pfam Rx N-terminal domain 5 88 IPR041118 -
Vvi15g0230 597 PRINTS Disease resistance protein signature 255 269 - -
Vvi15g0230 597 PRINTS Disease resistance protein signature 179 194 - -
Vvi15g0230 597 PRINTS Disease resistance protein signature 353 367 - -
Vvi15g0230 597 PRINTS Disease resistance protein signature 556 572 - -
Vvi15g0230 597 SUPERFAMILY L domain-like 481 591 - -
Vvi15g0230 597 Gene3D - 5 124 - -
Vvi15g0230 597 PANTHER DISEASE RESISTANCE PROTEIN RP 41 591 IPR044974 GO:0006952
Vvi15g0230 597 FunFam Probable disease resistance protein At1g63360 403 492 - -
Vvi15g0230 597 Pfam NB-ARC domain 161 389 IPR002182 GO:0043531
Vvi15g0230 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 417 IPR027417 -
Vvi15g0230 597 Coils Coil 102 122 - -
Vvi15g0230 597 Gene3D - 143 303 IPR027417 -
Vvi15g0230 597 Gene3D - 403 493 IPR036388 -
Vvi15g0230 597 CDD RX-CC_like 2 120 IPR038005 -
Vvi15g0230 597 Gene3D - 314 402 IPR042197 -
Vvi15g0230 597 FunFam Probable disease resistance protein At1g61300 140 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0230 Vvi-Chr15 6121922 6123715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0230 180 490 WRKY Transcription Factor Family AT5G45050 27.129 2.53e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0230 - - vvi:100265340 1188.71