Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0225 ATGGCTGAAAGTATTGTCACCGTTTTTCTAGAGAAGTTAACTGACCTGCTTTCCCAGGAAGCATTTCTACTCAGCAGAGTGGAAGAGCAGGTGAATCTGTTGAGTATTGACCTCGAATGGATGCGCCAGTTTCTCAAAGACGCGGATGCGAAGCGCAGATATGATCCAAGAATCAAGCTCTGGGTGAGTCAGATCAGGGACGTAACCTATGACGCCGAAGATGTCATCGACAGGTTCATGTTCGAGATGAATCACCAACAGCAAGGAAGTCTCAAATGCCTCAAGTTCCTTAAGTTACGATTGGTTCACAAGCTCGAGTCTCGAATCAGAGAGATCAATACCAAGATTGAGAAGATCAAGGCTGCCAAATCAACGTTCATTGTCGAAACCTTACCAGCTGCAAGCTGGCCCAACGAAGTTGTGCCACATAGAGAGAGGAGGGCTCCGATTGTGGAAGAAGTCAACGTGGTGGGAATTCAAGAGGATGCAAAAAGCGTCAAGCAAAAGCTGCTTAATGGAGAGATGCGGAGAGCTGTGGTGTCCATCGTGGGCATGGGTGGCTTGGGAAAGACTACCCTGGCTAAGAAAGTCTACAATGATAATGATGTCCAGCAATGCTTTGATTGTCATGCTTGGATTTATGTCTCTCAAGAGTATACAATCAGGGAGCTTTTGCTAGGCGTTGCTGTTCGTGTTGGGATTCTCTCCGAAGAGGAAAGGAGTAAAATGAACGAGAGCGATTTGGGGAATAGTCTTCGTGATTACCTGACTACCAAGAAGTACTTGATAGTTATGGATGATATGTGGAGAAATGAAGCTTGGGATAGGTTGGGCTTGTATTTTCCTGACTCGGTGAATGGCAGCAGAGTGTTGATCACCTCACGCAATAAACAGATTGGTCTTTATGCTGATCCACAAACCATTCCCCATGAACTTTCTTTTCTGACTGAAGAAGAGAGCTGGGAGCTCTTTCTCAAGAAAATTTTTCTGGCTGGGAGTGCAAATGCTGTTTGCCCCAGAGAATTGGAAGAGTTGGGAAAGAAAATTGTAGCAAATTGTGGGGGTTTGCCCCTTGCAATTGTGGTCTTGGGAGGCCTTCTATCAAGAAAAGAAAAGACACCGCTCTCCTGGCAAAAAAAGACTAATTCTAAACACTTGCATACTTCACGTAGTCTCCGATCTTTCATTTGTTTTTCTGTATGCTTCCAAGAAAACATTTTGAGATCTTTACACAGGCGTGTCAAATTGCTCACTGTACTGGACCTAGAACGCATGCCTATCAATACCATCCCAGAAGGCATAGGAGAACTTATCCACCTTAAGTACCTGTGCTTAAGGAGAACCCGCATAAAAAGGCTTCCATCGTCCATAGGTCGTCTTACAAATCTACAAACCCTAGACTTTCAAAGCACTTTCATTGAAATAATTCCTTCTACCATTTGGAAATTGCACCATTTGAGACATCTATACGGTCGTGGTGTGGTTTCAAGCCAGTCAGTGATAGATAAGTGCAGGAATGGCCCTTTGAGTGTTGACCACCTAACAAACCTCCAATCGTTAGGTTTAAGAGCAGGCAGTTGGTGCTGTGGTGAAGGCTTGGGAAAATTAACTGAGCTTAGAGAACTGATAATTGAATGGACCAAAATGGCACAAACAAAGAACCATGGATTTTCCGAGTCAGTAAAAAAGCTAACTGCTCTTCAATCCTTGCGTTTGTATACTTTAGGAGCGGAAATGTTTACCTTGCCGCACCTCATGCCTTTCTCAGACCACACCTACCTTTACCATCTAAGTTTAAGAGGAAGGCTCGAAAGGTTCCCTGATGAAATTGAATTCTACCCTCCAAACCTCATCTCCTTGGAATTGGAATGTTGGAATATAGAGCAAGACCCAATGGTGACCCTAGAGAAGCTGCCAAACTTGAGATTTCTCATATTATCCCTTTGTTACTCTATGGTAAAGAAGATGGTCTGTACTTCTGGAGGATTCCAGCAACTCGAAACCCTTACGCTCTGGGGTTTGAAAGAATTAGAAGAATTGATTGTGGAGGAAGGGGCAATGCCTGATCCGAAGGATTTAGTAATTGAGACTTGCCCTAAAATGAAAAGGCTTTCCCATGGATTGCTGCAACGAAAAAATTTGCAGCACCTAAAGTTGTATGATTTGTCTCCTGAGTTAATGGATGAGCTTTCTCTGATAGAAGGAGAAGATCGGGAGAAGATCTGCCTCGCCACCTCAATACACGGGTGGAGGCGTACGGCATCATGA 2268 0.4409 MAESIVTVFLEKLTDLLSQEAFLLSRVEEQVNLLSIDLEWMRQFLKDADAKRRYDPRIKLWVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIKAAKSTFIVETLPAASWPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVVSIVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGVAVRVGILSEEERSKMNESDLGNSLRDYLTTKKYLIVMDDMWRNEAWDRLGLYFPDSVNGSRVLITSRNKQIGLYADPQTIPHELSFLTEEESWELFLKKIFLAGSANAVCPRELEELGKKIVANCGGLPLAIVVLGGLLSRKEKTPLSWQKKTNSKHLHTSRSLRSFICFSVCFQENILRSLHRRVKLLTVLDLERMPINTIPEGIGELIHLKYLCLRRTRIKRLPSSIGRLTNLQTLDFQSTFIEIIPSTIWKLHHLRHLYGRGVVSSQSVIDKCRNGPLSVDHLTNLQSLGLRAGSWCCGEGLGKLTELRELIIEWTKMAQTKNHGFSESVKKLTALQSLRLYTLGAEMFTLPHLMPFSDHTYLYHLSLRGRLERFPDEIEFYPPNLISLELECWNIEQDPMVTLEKLPNLRFLILSLCYSMVKKMVCTSGGFQQLETLTLWGLKELEELIVEEGAMPDPKDLVIETCPKMKRLSHGLLQRKNLQHLKLYDLSPELMDELSLIEGEDREKICLATSIHGWRRTAS* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0225 755 Pfam Rx N-terminal domain 5 88 IPR041118 -
Vvi15g0225 755 Gene3D - 5 124 - -
Vvi15g0225 755 FunFam Probable disease resistance protein At1g61300 140 306 - -
Vvi15g0225 755 SUPERFAMILY L domain-like 383 722 - -
Vvi15g0225 755 Gene3D - 314 395 IPR042197 -
Vvi15g0225 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 400 IPR027417 -
Vvi15g0225 755 PANTHER DISEASE RESISTANCE PROTEIN RP 381 692 IPR044974 GO:0006952
Vvi15g0225 755 Gene3D Ribonuclease Inhibitor 408 528 IPR032675 -
Vvi15g0225 755 Gene3D Ribonuclease Inhibitor 531 736 IPR032675 -
Vvi15g0225 755 PRINTS Disease resistance protein signature 636 652 - -
Vvi15g0225 755 PRINTS Disease resistance protein signature 255 269 - -
Vvi15g0225 755 PRINTS Disease resistance protein signature 353 367 - -
Vvi15g0225 755 PRINTS Disease resistance protein signature 179 194 - -
Vvi15g0225 755 Pfam NB-ARC domain 161 382 IPR002182 GO:0043531
Vvi15g0225 755 Coils Coil 102 122 - -
Vvi15g0225 755 Gene3D - 143 303 IPR027417 -
Vvi15g0225 755 CDD RX-CC_like 2 120 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0225 Vvi-Chr15 5994639 5997338 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0225 180 374 WRKY Transcription Factor Family AT5G45050 31.000 1.85e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0225 - - vvi:100258927 764.992