Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0216 ATGGTTGACATTGTTATTTCCGTTGCAGCAAAAGTTGCAGAGTACCTGGTTGGTCCAATTATACGTCCACTGGGTTATGTGGTTAACTACCGTCACAACATTACGGATCTCAACCAAAAAATTCAGAGTCTCCATCTTGAAAGGGAGAGGCTGCAGATACCTGTGGATGATGCTAATAGGCAAAGGGATGAAATCTTTTCTGATGTTCAGGAGTGGCTGACGTATGCAGAAGGGATCATCCAAAAGAGAGATGATTTCAATGAAGATGAAAGGAAAGCAAGCAAGAGCTGTTTCTATTTAAAGTCCCGCTACCAGCTAAGCAAGCAAGCAAAGAAGCAGGCTGCGGAGATTGTTGATAAAATCCAAGAAGCTCATAACTTTGGTGGCAGAGTATCGCATCGCGCTCCTCCTCCTCCTCCTCCATTCATCAGCTCTGCATCTTTCAAAGATTATGAGGCTTTCCAGTCAAGAGAGTCTACTTTTAACCAAATTATGGAGGCCTTGAGAAACGAAGATATGCGCATGCTCGGTGTCTGGGGAATGGGCGGCGTGGGCAAAACCACTCTTGTCAAACAAGTAGCTCAACAAGCGGAGGAAGACAAGCTCTTTCACAAGGTGGTCCTGGTGTTACACATATCCCAAACTCCCAACATCACAGAAATTCAAGAAAAAATTGCAAGAATGTTGGGTTTGAAATTTGAGGCGGGGGAGGATAGAGCAGGTCGCCTGATGCAAAGGTTGAAGAGAGAGAAGAAAATCCTGGTGATCTTAGATGATATCTGGGAGAAACTTGGGTTGGGAAAAATAGGAATTCCTTATGGAGATGATCACAAGGGGTGCAAAGTGCTGCTGACTTCCCGGGAGCGTCAGGTTTTATCTAAAGATATGTATACTCAAAAGGAGTTCCATCTTCAACATTTAAGTGAAGATGAAGCCTGGAATTTATTCAAGAAGACAGCAGGTGAATCCGTGGAGAAGCCTGAACTGCGTCCCATAGCAGTTGATGTAGCTAAAAAATGTGACGGTCTACCAGTTGCAATTGTCACCATTGCAAATGCATTAAGAGGTGAGATGGTGGGTGTATGGGAGAATGCGTTGGAAGAACTGAGAAGGTCTGCACCAACAAACATCAGAGGAGTAACTAAAGGCGTCTACTCATGTCTGGAGCTGAGCTACAACCATTTGGAAGGTGATGAAGTAAAGTCATTGTTTTTACTTTGCGCTTTGCTGGGGGATGGTGATATTTCCATGGATCGCTTGCTACAATTTGCTATGTGTTTGAATTTGTTTGAAAGAACATATTCATGGGAGAAAGCAATAAATAAACTAATTACATTGGTGGAAAACCTCAAAGTCTCAAGCTTGTTGCTTGACCATGAAGGAGATGGTGATAGCTCTTCGAGCTTGCTTTTTGATCAAGCTTTTGTCAGAATGCATGATGTTGTTCGTGATGTTGCCAGATCAATTGCATCCAAAGATCCTCATCGATTTGTGGTGAGAGAAGCTGTTGGATCACAAGAAGCTGCTGAATTACGAGAATGGCAGAAGACGGATGAGTGCAGAAATTGCACTCGCATCTCTTTGATATGCAGAAATATGGATGAGCTTCCACAGGGCTTGGTATGTCCGCAACTTGAATTCTTTTTATTGAATTCAAGTAATGATGATCCTTATTTGAAAATTCCAGATGCCTTTTTCCAAGACACCAAACAACTCAGAATTTTAGATTTGTCTAAAGTGTCTCTTACACCATCTCCTTCATCACTTGGTTTTCTTTCAAATCTTCAAACATTGCGTCTAAATCAATGCCAGATCCAAGACATAACAGTAATTGGAGAACTGAAGAAACTACAAGTCCTTAGTTTGGCAGAGTCCAACATTGAACAGCTGCCAAATGAAGTGGCGCAATTGAGTGATCTAAGGATGTTGGATTTGCGGTATTGCGATAGCCTTGAAGTAATTCCACGAAATGTTATATCAAGTCTATCCCAATTAGAGTATTTGAGTATGAAAGGAAGTTTTCGTATTGAATGGGAGGCGGAAGGATTTAATAGGGGAGAAAGAATTAATGCTTGCCTTTCTGAGCTGAAACACCTGTCTAGTTTGAGGACTTTGGAGTTACAACTATCAAATCTCAGTTTGTTTCCAGAAGATGGCGTGCCCTTCGAAAACCTCAACTTGACCAGATATTCAATAGTAATAAGCCCTTACCGGATACGAAATGATGAGTATAAAGCCTCCTCAAGAAGGTTGGTGTTTCAAGGGGTTACAAGTCTTTATATGGTGAAGTGCTTCTCCAAGCTGTTGAAGAGAAGTCAAGTTCTAGACTTGGGGGAATTGGATGATACTAAGCATGTGGTTTATGAGTTAGACAAGGAAGGTTTCGTTGAACTCAAGTATCTCACTCTCTCTGGATGTCCTACCGTTCAATACATCCTTCATTCCAGTACTTCAGTGGAATGGGTTCCACCACCTAATACCTTCTGTATGTTGGAGGAACTGATCCTTGATGGCCTAGATAACTTGGAGGCAGTATGCCATGGCCCAATTCCGATGGGGTCTTTTGGTAACTTAAGAATTCTAAGACTAGAGAGTTGTGAGAGGTTGAAATATGTTTTCTCTCTTCCCACACAACATGGAAGGGAATCAGCTTTTCCTCAACTGCAACATTTGGAGTTGAGTGATCTCCCAGAGCTCATTAGCTTCTACTCCACAAGATGCAGTGGTACCCAGGAGTCAATGACATTTTTCAGTCAACAGGCTGCATTCCCTGCCTTGGAGTCCTTGCGTGTACGTCGTCTAGATAATCTGAAAGCATTGTGGCACAACCAACTTCCAACAAATTCCTTTTCCAAACTAAAGGGCTTGGAATTAATTGGCTGTGATGAATTGCTGAATGTTTTTCCCCTTTCCGTGGCGAAAGTCCTTGTGCAACTTGAGGACCTAAAGATATCCTTTTGTGAAGTACTAGAGGCAATTGTTGCTAATGAGAATGAAGATGAAGCAACATCTTTATTCTTATTCCCTAGACTAACCTCTCTCACACTCAATGCTTTACCCCAACTCCAAAGATTTTGCTTCGGAAGGTTTACTTCAAGATGGCCACTTTTAAAAGAATTGGAAGTGTGGGATTGTGATAAAGTGGAGATACTATTTCAAGAAATAGATTTGAAAAGTGAACTTGACAACAAAATTCAACAATCACTCTTCTTGGTTGAAAAGGTTGCACTCCCAAACTTGGAGTCCTTGTTTGTAGGCACACTGGATAATATAAGAGCATTGCGGCCTGACCAACTTCCAGCAAATTCATTTTCCAAATTAAGGAAATTGGAAGTAATTCTATGCAACAAATTGCTAAATCTTTTTCCGCTTTCTGTGGCGAGTGCTCTTGTGCAACTTGAGGACCTATGGATATCCTGGAGTGGAGTGGAGGCAATTGTTGCCAATGAAAATGAAGATGAAGCAGCACCTTTACTCTTATTCCCTAACCTTACCTCTCTCACACTCCGTTATTTACACCAACTCAAAAGATTTTGCTCTGGAAGGTTTAGTTCAAGCTGGTCACTTCTTAAAAAATTAGAAGTGGACAATTGTGATAAAGTGGAGATACTCTTTCAACAAATAGGTTTGGAATGTGAACTTGAGCCACTCTTCTGGGTAGAACAGGTTGCATTCCCAAGCTTGGAGTCCTTGTTTGTATGCAACCTACATAATATAAGAGCATTGTGGCCTGACCAACTTCCAGCAAATTCATTTTCCAAATTAAGGAAATTGCGAGTAAGTAAATGCAACAAATTGCTAAATCTTTTTCCGCTTTCTATGGCAAGTGCTCTTATGCAACTTGAGGACCTACATATATCGGGGGGTGAAGTGGAGGCAATTGTTACCAATGAAAATGAAGATGAAGCAGCACCTTTATTTTTATTCCCTAACCTTACCTCTCTCACACTCCGTGATTTACACCAACTCAAAAGATTTTGCTCTGGAAGGTTTAGTTCAAGCTGGCCACTTTTGAAAAAATTGGAAGTGCTTGATTGTGATAAAGTGGAGATACTCTTTCAACAAATAAGTTTGGAATGTGAACTTGAGCCACTCTTCTGGGTAGAACAGGTTGCACTCCCAGGCTTGGAGTCCTTGTATACAGACGGACTAGATAATATAAGAGCATTGTGTCTTGACCAACTTCCAGCAAATTCATTTTCCAAATTAAGGAAACTACAAGTAAGGGGATGCAACAAATTGCTAAACCTTTTTCCGGTTTCTGTGGCGAGTGCTCTTGTGCAACTTGAGGACCTATATATATCGGCGAGTGGAGTGGAGGCAATTGTTGCCAATGAAAATGAAGATGAAGCCTCACCTTTACTCTTATTCCCTAACCTTACCTCTCTCACACTCTTCAGTTTACACCAACTGAAAAGATTTTGCTCTGGAAGGTTTAGTTCAAGCTGGCCACTTCTGAAAGAATTGGAAGTGGTCGATTGTGATAAAGTGGAGATACTCTTTCAACAAATAAATTTGGAATGTGAACTTGAGCCACTCTTTTGGGTAGAACAGGAAGCATTTCCTAATTTGGAAGAACTAACATTGAGCTTAAAGGGCACTGTGGAGATATGGCGAGGCCAATTTTCAAGGGTGTCTTTTTCGAAGTTAAGCGTTTTGACAATAAAGGAGTATCATGGTATTTCAGTTGTGATTCCCTCGAATATGGTTCAAATACTACATAATCTGGAAAAACTAGAGGTGAGAATGTGTGATTCAGTGAATGAGGTTATCCAAGTAGAAATAGTGGGAAATGATGGACATGAACTAATAGATAATGAGATTGAGTTCACCAGATTAAAGAGTTTGACATTTTATCATTTGCCAAATCTGAAAAGCTTTTGCTCATCAACAAGATATGTCTTCAAATTCCCATCCTTGGAAACAATGAAGGTGGGAGAATGTCATGGGATGGAATTTTTTTGCAAGGGAGTCTTAAATGCACCAAGGCTAAAAAGTGTACAAGATGAATTTTTTCGAAGAATATTGGCAAGATGA 5037 0.4084 MVDIVISVAAKVAEYLVGPIIRPLGYVVNYRHNITDLNQKIQSLHLERERLQIPVDDANRQRDEIFSDVQEWLTYAEGIIQKRDDFNEDERKASKSCFYLKSRYQLSKQAKKQAAEIVDKIQEAHNFGGRVSHRAPPPPPPFISSASFKDYEAFQSRESTFNQIMEALRNEDMRMLGVWGMGGVGKTTLVKQVAQQAEEDKLFHKVVLVLHISQTPNITEIQEKIARMLGLKFEAGEDRAGRLMQRLKREKKILVILDDIWEKLGLGKIGIPYGDDHKGCKVLLTSRERQVLSKDMYTQKEFHLQHLSEDEAWNLFKKTAGESVEKPELRPIAVDVAKKCDGLPVAIVTIANALRGEMVGVWENALEELRRSAPTNIRGVTKGVYSCLELSYNHLEGDEVKSLFLLCALLGDGDISMDRLLQFAMCLNLFERTYSWEKAINKLITLVENLKVSSLLLDHEGDGDSSSSLLFDQAFVRMHDVVRDVARSIASKDPHRFVVREAVGSQEAAELREWQKTDECRNCTRISLICRNMDELPQGLVCPQLEFFLLNSSNDDPYLKIPDAFFQDTKQLRILDLSKVSLTPSPSSLGFLSNLQTLRLNQCQIQDITVIGELKKLQVLSLAESNIEQLPNEVAQLSDLRMLDLRYCDSLEVIPRNVISSLSQLEYLSMKGSFRIEWEAEGFNRGERINACLSELKHLSSLRTLELQLSNLSLFPEDGVPFENLNLTRYSIVISPYRIRNDEYKASSRRLVFQGVTSLYMVKCFSKLLKRSQVLDLGELDDTKHVVYELDKEGFVELKYLTLSGCPTVQYILHSSTSVEWVPPPNTFCMLEELILDGLDNLEAVCHGPIPMGSFGNLRILRLESCERLKYVFSLPTQHGRESAFPQLQHLELSDLPELISFYSTRCSGTQESMTFFSQQAAFPALESLRVRRLDNLKALWHNQLPTNSFSKLKGLELIGCDELLNVFPLSVAKVLVQLEDLKISFCEVLEAIVANENEDEATSLFLFPRLTSLTLNALPQLQRFCFGRFTSRWPLLKELEVWDCDKVEILFQEIDLKSELDNKIQQSLFLVEKVALPNLESLFVGTLDNIRALRPDQLPANSFSKLRKLEVILCNKLLNLFPLSVASALVQLEDLWISWSGVEAIVANENEDEAAPLLLFPNLTSLTLRYLHQLKRFCSGRFSSSWSLLKKLEVDNCDKVEILFQQIGLECELEPLFWVEQVAFPSLESLFVCNLHNIRALWPDQLPANSFSKLRKLRVSKCNKLLNLFPLSMASALMQLEDLHISGGEVEAIVTNENEDEAAPLFLFPNLTSLTLRDLHQLKRFCSGRFSSSWPLLKKLEVLDCDKVEILFQQISLECELEPLFWVEQVALPGLESLYTDGLDNIRALCLDQLPANSFSKLRKLQVRGCNKLLNLFPVSVASALVQLEDLYISASGVEAIVANENEDEASPLLLFPNLTSLTLFSLHQLKRFCSGRFSSSWPLLKELEVVDCDKVEILFQQINLECELEPLFWVEQEAFPNLEELTLSLKGTVEIWRGQFSRVSFSKLSVLTIKEYHGISVVIPSNMVQILHNLEKLEVRMCDSVNEVIQVEIVGNDGHELIDNEIEFTRLKSLTFYHLPNLKSFCSSTRYVFKFPSLETMKVGECHGMEFFCKGVLNAPRLKSVQDEFFRRILAR* 1679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0216 1678 SMART AAA_5 172 307 IPR003593 GO:0016887
Vvi15g0216 1678 SUPERFAMILY L domain-like 1077 1359 - -
Vvi15g0216 1678 Gene3D Ribonuclease Inhibitor 1507 1673 IPR032675 -
Vvi15g0216 1678 Gene3D Ribonuclease Inhibitor 1071 1355 IPR032675 -
Vvi15g0216 1678 Gene3D Ribonuclease Inhibitor 1356 1506 IPR032675 -
Vvi15g0216 1678 Gene3D - 143 304 IPR027417 -
Vvi15g0216 1678 ProSiteProfiles Leucine-rich repeat profile. 594 615 IPR001611 GO:0005515
Vvi15g0216 1678 SUPERFAMILY L domain-like 477 1051 - -
Vvi15g0216 1678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 407 IPR027417 -
Vvi15g0216 1678 Gene3D Ribonuclease Inhibitor 507 737 IPR032675 -
Vvi15g0216 1678 Gene3D Ribonuclease Inhibitor 749 1059 IPR032675 -
Vvi15g0216 1678 SUPERFAMILY RNI-like 1396 1651 - -
Vvi15g0216 1678 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1484 1659 - -
Vvi15g0216 1678 PRINTS Disease resistance protein signature 340 354 - -
Vvi15g0216 1678 PRINTS Disease resistance protein signature 635 651 - -
Vvi15g0216 1678 PRINTS Disease resistance protein signature 175 190 - -
Vvi15g0216 1678 PRINTS Disease resistance protein signature 247 261 - -
Vvi15g0216 1678 Coils Coil 27 47 - -
Vvi15g0216 1678 FunFam Probable disease resistance protein At1g61300 144 300 - -
Vvi15g0216 1678 Gene3D - 306 392 IPR042197 -
Vvi15g0216 1678 Pfam NB-ARC domain 158 393 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0216 Vvi-Chr15 5757227 5768973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0216 172 812 WRKY Transcription Factor Family AT5G45050 23.676 1.58e-11 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0216 - - vvi:100855173 3276.88