LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi15g0214	ATGGCTGAAAGTATTGTCACCGTTTTTCTAGAGAAGTTAACTGACCTGCTTTCCAAGGAAGCATTTCTACTCAGCAGAGTGGAAGAGCAGGTGAAGCTGTTGAGTAGCGAGCTCGAATGGATGCGCCTTTTTCTCAAAGACGCGGATGCGAAGCGCAGATATGATCCAAGAATCAAGCTCTGGGTGAGTCAGATCAGGGACGTAACCTATGACGCCGAAGATGTCATCGACAGGTTCATGTTCGAGATGAATCACCAACAGCAAGGAAGTCTCAAATGCCTCCAGTTCCTTAAGTTACGATTTGTTCACAAGCTCGAGTCTCGAATCAGAGAGATCAATATCAAGATTGAGAAGATCATGGCTAACAAATCAAGGTACGGTGTCGAAACCTTACCAGCTGCAAGCTCGTCCAACGAAGCTGTGCCACATAAAGAGAAGAGGGCTCCGATTGTTGAAGTCAACGTGGTGGGAATTCAAGAGGATGCAAAAAGCGTTAAGCAAAATCTGCTTAATGGAGAGATGCGGAGAGCTGTGGTGTCCATCGTGGGCATGGGTGGCTTGGGAAAGACTACCCTGGCTAAGAAAGTCTATAATGATAATGATGTCCGGCAATGCTTTGATTGTCATGCTTGGATTTATGTCTCTCAAGAGTATACAATCAGGGAGCTTTTGCTAGGCGTTGCTGTTTGTGTTAGGATTCTCTCCGAAGAGGAAAGGAGTAAAATGGACGAGAGCGAGTTGGGGGATAGGCTTCGTGATTACCTGACTACCAAGAAGTACTTGATAGTTTTGGACGATATGTGGAGAAATGAAGCTTGGGATAGGCTGGGCTTGTATTTTCCTGACTCGGTGAATGGCAGCAGGGTGTTGATCACCTCACGCAATAAAGAGATTGGTTTTTATGCTGATCCACAAGCCATTCCCCATGAACTTTCTTTTCTGACTGAAGAAGAGAGCTGGGAGCTCTTTCTCAAGAAAATTTTTCTGGCTGGGAGTGCAAATGCTGTTTGCCCCAGAGAATTGGAAGAGTTGGGAAAGAAAATTGTAGCAAATTGTGGGGGTTTGCCCCTTGCAATTGTGGTCTTGGGAGGCCTTCTATCAAGAAAAGAAAAGACACCGCTCTCCTGGCAAAAAGTACTGGACAGCCTGACTTGGCACCTAAATCAAGGTCCAGACTCATGTTTGGGGGTCCTTGCTTTAAGCTACAATGATATGCCGTATTACTTGAAGTCCTGTTTCCTTTACTGTGGTCTTTTCCCAGAAGACTCAGAAATCTGGACAGATAAGTTGATCCGCTTGTGGGTTGCAGAAGGGTTTATACAAAGAAGAGGAGTAGAAATAGCGGAAGACGTCGCGGAAGATCACTTACAGGAATTGGTACATAGAAGCATGATTCAAGTGGCTGCCAGGAGTTTCGATGGAAGAGTGATGTCCTGTCGCATGCACGATCTGCTTCGAGACCTTGCCATTTCTGAGGCCAAAGATACAAAATTTTTCGAGGGATATGAAAGCATTGATTCTACATCCCCTGTGAGTGTTCGTCGACTAACCATTCATCAAGATAAGTTCAGGAATGGCCCTTTGAGTGTTGGTCACCTAACAAACCTCCAATCGTTATGTTTAAGAGCAGGCAGTTGGTGCTGTGGTGAAGGCTTGGGAAAATTAATTGAGCTTAGAGAACTGACAATTGTATGGACCGAAATCGCACAAACAAAGAACCAGGGATTTTCCGAGTCAGTAAAAAAGCTAACTGCTCTTCAATCCTTGCGTTTGTATACTTTAGGAGAGGAAATGTTAACCATGCCGCACCTTATGCCTTTCTCAGACCACACCTACCTTTACCATCTAAGTTTAAATGGAAGGCTCGAAAGGTTCCCTGATGAAATTGAATTCTACCCTCCAAACCTCATCTCCTTGGAATTGCGATATCGGAATGCAGAGCAAAACCCAATGGTGACCCTAGAGAAGCTGCCAAACTTGAGATTTCTCAGATTATCCCTTTGTTCCTCTATGTTAAAGAAGATGGTCTGTACTTCTGGAGGATTCCAGCAACTCGAAACCCTTAGGCTCTGGGGTTTGAAAGAATTAGAAGAATTGATTGCGGAGGAAGGGGCAATGCCTGATCTGAAGGATTTAGTAATTGATGCTTGCCCTAAAATGAAAAGGCTTTCCCATGGATTGCTGCAACGAAAAAATTTGCAGCACCTAAAGTTGTATGATTTGTCTCCTGAGTTAATGGATGAGCTTTCTCGGATAGAAGGAGATCTGGAGAAGATCTGCCTCGCCACCTCAATACACGGGTGGAGGCGTACGGCATCTTGA	2322	0.4483	MAESIVTVFLEKLTDLLSKEAFLLSRVEEQVKLLSSELEWMRLFLKDADAKRRYDPRIKLWVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLQFLKLRFVHKLESRIREINIKIEKIMANKSRYGVETLPAASSSNEAVPHKEKRAPIVEVNVVGIQEDAKSVKQNLLNGEMRRAVVSIVGMGGLGKTTLAKKVYNDNDVRQCFDCHAWIYVSQEYTIRELLLGVAVCVRILSEEERSKMDESELGDRLRDYLTTKKYLIVLDDMWRNEAWDRLGLYFPDSVNGSRVLITSRNKEIGFYADPQAIPHELSFLTEEESWELFLKKIFLAGSANAVCPRELEELGKKIVANCGGLPLAIVVLGGLLSRKEKTPLSWQKVLDSLTWHLNQGPDSCLGVLALSYNDMPYYLKSCFLYCGLFPEDSEIWTDKLIRLWVAEGFIQRRGVEIAEDVAEDHLQELVHRSMIQVAARSFDGRVMSCRMHDLLRDLAISEAKDTKFFEGYESIDSTSPVSVRRLTIHQDKFRNGPLSVGHLTNLQSLCLRAGSWCCGEGLGKLIELRELTIVWTEIAQTKNQGFSESVKKLTALQSLRLYTLGEEMLTMPHLMPFSDHTYLYHLSLNGRLERFPDEIEFYPPNLISLELRYRNAEQNPMVTLEKLPNLRFLRLSLCSSMLKKMVCTSGGFQQLETLRLWGLKELEELIAEEGAMPDLKDLVIDACPKMKRLSHGLLQRKNLQHLKLYDLSPELMDELSRIEGDLEKICLATSIHGWRRTAS*	774

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi15g0214	773	Pfam	NB-ARC domain	160	387	IPR002182	GO:0043531
	Vvi15g0214	773	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	148	416	IPR027417	-
	Vvi15g0214	773	Gene3D	-	313	401	IPR042197	-
	Vvi15g0214	773	CDD	RX-CC_like	2	119	IPR038005	-
	Vvi15g0214	773	FunFam	Probable disease resistance protein At5g66910	313	401	-	-
	Vvi15g0214	773	PANTHER	DISEASE RESISTANCE PROTEIN RP	36	742	IPR044974	GO:0006952
	Vvi15g0214	773	SUPERFAMILY	L domain-like	481	741	-	-
	Vvi15g0214	773	FunFam	Probable disease resistance protein At1g61300	137	305	-	-
	Vvi15g0214	773	Gene3D	-	136	301	IPR027417	-
	Vvi15g0214	773	Pfam	Rx N-terminal domain	5	88	IPR041118	-
	Vvi15g0214	773	FunFam	Probable disease resistance protein At1g63360	402	491	-	-
	Vvi15g0214	773	Coils	Coil	102	122	-	-
	Vvi15g0214	773	PRINTS	Disease resistance protein signature	655	671	-	-
	Vvi15g0214	773	PRINTS	Disease resistance protein signature	178	193	-	-
	Vvi15g0214	773	PRINTS	Disease resistance protein signature	254	268	-	-
	Vvi15g0214	773	PRINTS	Disease resistance protein signature	352	366	-	-
	Vvi15g0214	773	Gene3D	-	402	492	IPR036388	-
	Vvi15g0214	773	Gene3D	Ribonuclease Inhibitor	550	758	IPR032675	-
	Vvi15g0214	773	Gene3D	-	5	119	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi15g0214	Vvi-Chr15	5685390	5688083	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi15g0214	179	489	WRKY Transcription Factor Family	AT5G45050	26.433	7.21e-13	70.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi15g0214	-		-	vvi:100267466	1032.71