Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0205 ATGCCGAAGCCACCCATCCCTCGCTCCGCCTCCGACTCCCTCATCTCCAAATTGCACCTCCCTTCATCTTCCCGGTCTTTCAGTTCATCCCTCCCCTCCTCCAGGCCTTCCTCTTCCTGGAGGAAGAGAGTATTCAAACAAGCGTTGTCCAGCCCCGGGAAGAACAATTTATCAAGGCATTCGGACTTGACAGAAGAGAGCCTCGAGGCATATAACAGGAGGAACGAATTCAGTCCCAGTCCTTACTACAGAGGCCTCACCGATTCCTCCCTTTATATAAGCCGGCAGCGCGCACCCAGCAGTCCTGGAAGGGAGAGCCATGCAACCACTGTTGCCACTTCAAGCTCTATCTCCACCTTAATTATTAAGGTGCAAAAGTGGACTACCACTTGCTTCACCTCCAAAAGTGGTAGAGGAGAAGAAGATGACGTTAAGAAACCAAGAGTGGAGGCAAAGCCTGCTGCTTCATCATCATCATCATCCAAGAGTAGAGGGACAGTATTGACAGTAATGAAGGAAGAGAGTTGCAGCTTGGGGATCAGCAATGATGTTGTATCGGTTAACCCGGAGAAGCCATTGAGGGAGAGAGTATCAGAGGTAGAGGTTCCCGCACCGATAATATCACGAAAAAAGGTAGTTTTTGCGGAGAACGGTGAGACCGTGAGTGATGAGAAAGGAAAGAATAAGGATTTCACATGGGCTGACAAGTATCGGCCCAAGGCTCTGTCAGACTTCATTTGCAATCGAGACAAGGCAGTTCAGCTCCAGGATTTGGTGAAAGTGGAACAGCATCCTCACTTCATATTTGAAGGACTTGCAGGGGTGGGAAAAAAGACCATGATATCCGCTTTTCTTCGAGAAGTGTTCGGACACGACAGAGTACAGACAAGGGAGGAGTGTAAGGAATTTTACTTGAAGGGTGAATCAATACGTAGCATCCGAGTAAATGTGAAGGTATCTTGTCATCACATAGAGGTCAATCTCTCTGACCTAAAAGGGTACGAGAAGCAAGTCATTGTTCAACTTATCCACGAAACAGGCAACAACAGAGCCAACAAGGCTGTGCGTGTCAACCAGGAAGTCCAGTGCAACCAGGACAATCGCTATGCAATTGTTCTGTACGAAGCAGAGAAGTTATCAACAGAGGCGCTACTATATTTCAAGTGGCTACTAGACAAGTATGAAGGGCATAACATGGTCTTCTTTAGCTGCTCCGATACCTCAAAGCTTCAGCCAATTAAGTCACTCTGCACTATGGTTCAGCTTCTCCCACCATCTGATGAGGAGATTGTTGAAGTCTTGGAGCTTATAGCTAAACAAGAAAGCATCAATTTGCCACGAGAATTGGCTGAAAAGATTGTGGGAAACTCTAAGAACAACCTCCGTCAAGCTATTCGTTCCTTTGAGGCTACCTGGAAGTTCAAGTATCCCTTCGAGGAAGATCAAGAAATTAGGACCGGGTGGGAAGATGATATTGCCAGGATTGCAAAGAATATCATTGAGGAACAAACCCCCAAGCAGTTGTATAACATCAGAGGAAAGCTCCAAAAACTTACAGAGCACAATGTAGCTTCTGAGTTCATTTACAAAACTCTGGTTGCACAACTTAAGATGCAGTTAAACTGCAGCTACTTACAAATCCGATTCGACAGCATATTTGATGATTACTATAGGGAAGAAGGAAGCATGCAGAAGGAAGATGGAAGCATGCTTGAAACTGATCGTTCATTTGTGCGTAATCGGCATGAGGAAATGGGCAAACGCCTTAATGACCCCACGAGAAAAAATGCTCATGATGTGTTGAAGATCGAAGAGTCTATTGCTAAATTCATGAGCTGCTACAAGTCTTTGTTGAGCAACCAAGGCGTACCATAA 1875 0.4576 MPKPPIPRSASDSLISKLHLPSSSRSFSSSLPSSRPSSSWRKRVFKQALSSPGKNNLSRHSDLTEESLEAYNRRNEFSPSPYYRGLTDSSLYISRQRAPSSPGRESHATTVATSSSISTLIIKVQKWTTTCFTSKSGRGEEDDVKKPRVEAKPAASSSSSSKSRGTVLTVMKEESCSLGISNDVVSVNPEKPLRERVSEVEVPAPIISRKKVVFAENGETVSDEKGKNKDFTWADKYRPKALSDFICNRDKAVQLQDLVKVEQHPHFIFEGLAGVGKKTMISAFLREVFGHDRVQTREECKEFYLKGESIRSIRVNVKVSCHHIEVNLSDLKGYEKQVIVQLIHETGNNRANKAVRVNQEVQCNQDNRYAIVLYEAEKLSTEALLYFKWLLDKYEGHNMVFFSCSDTSKLQPIKSLCTMVQLLPPSDEEIVEVLELIAKQESINLPRELAEKIVGNSKNNLRQAIRSFEATWKFKYPFEEDQEIRTGWEDDIARIAKNIIEEQTPKQLYNIRGKLQKLTEHNVASEFIYKTLVAQLKMQLNCSYLQIRFDSIFDDYYREEGSMQKEDGSMLETDRSFVRNRHEEMGKRLNDPTRKNAHDVLKIEESIAKFMSCYKSLLSNQGVP* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0205 624 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 232 550 - -
Vvi15g0205 624 MobiDBLite consensus disorder prediction 133 166 - -
Vvi15g0205 624 Gene3D - 488 614 - -
Vvi15g0205 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 473 IPR027417 -
Vvi15g0205 624 FunFam replication factor C subunit 3 426 484 - -
Vvi15g0205 624 MobiDBLite consensus disorder prediction 136 150 - -
Vvi15g0205 624 SUPERFAMILY post-AAA+ oligomerization domain-like 487 541 IPR008921 GO:0003677|GO:0006260
Vvi15g0205 624 FunFam - 487 531 - -
Vvi15g0205 624 FunFam Replication factor C subunit 3 231 425 - -
Vvi15g0205 624 Gene3D - 231 425 IPR027417 -
Vvi15g0205 624 MobiDBLite consensus disorder prediction 15 58 - -
Vvi15g0205 624 Gene3D - 426 487 - -
Vvi15g0205 624 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0205 Vvi-Chr15 5388307 5391464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0205 233 618 Core DNA Replication Machinery Family AT5G27740 32.398 5.66e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0205 K10756 - vvi:100265748 1156.35