Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0197 ATGGGACATACAGCTATACCGGTTTTTTATAACGTGGATCCCTCTCATGTAAGAAAACAAACCGAGAGTTTTGCAGAAGCATTTGCCAAACATGACCATATTTACGGGGACAAGTCGGAGAAAGTGCTCAAGTGGAGAAAAGCTTTAACTGTGGCATCCGGACTGTCTGGGTATGATTCACGAGATAGACATGAAACTGAGGTTATCGATGAGGTCGTTACCATGATTTTTAATAAATTGATTGATGCATCCTCAAGCAACATGGAGGGTCTTGGGACTGAAGCAGTTGAAGGCCTAGTCCTCGATTTGTCTGCTTCGAAAGAGCTACACTTCAGTGCTGGTGCCTTTACAGAGATGAACAGATTAAGAGTGCTCCGATTCTATAATGTGAAAATGAATGGAAGCTTGGAATATTTATCTGAAAAAGAGTTATTTGATACTACTTATCATCCTTGGAGATGGAGAGCCCATGAGATACAAAGAGCTGATGAGATGCAAACTGATTGTAAATTGCATTTATCTGGAGATTTAAAATTTCTATCCAACAACTTAAGATCTCTCTATTGGCATGAATACCCTTTGAAGTCCCTTCCATCAAATTTTCATCCAAAGAAGCTTGTTGAGCTAAATATGTGCTCTAGTCGGCTTGAACAACTATGGAAAGGAGACAAGTCATTTGAGAAGTTGAAGTTCATCAAACTTAGCCACTCTCAATATCTAACCAGAACCCCAGACTTCTCTGGAGCCCCAAACCTTGAGAGGCTAATTCTCGAAGGTTGTACAAGTATGGTCAAGGTTCACCCATCCATTGGAGCTCTCCAGAAGCTTATTTTCCTGAATTTAGAAGGCTGCAAGAACCTCAAGAGTTTTGCAAGCAGCATCCATATGAATTCTCTTCAAATTCTTACTCTCTCTGGCTGCTCAAAACTCAAGAAGTTTCCAGAGATGCTGGAAAATATGAAGAGTTTGAGACAGCTTTTGCTTGATGAGACTGCCCTACGAGAACTACCTTCATCGATTGGACGCCTAAATGGGCTTGTTTTGTTGAATTTGACGAATTGTAAAAAACTTGTGAGTCTTCCACAAAGCCTTTGCAAGCTGACGTCTCTTCAGATTCTTACTCTGGCTGGTTGCTCAGAACTGAAGAAGTTGCCAGATGAGTTGGGTAGCCTACGATGTTTAGTAAATCTGAATGCAGATGGAAGTGGTATACAAGAGGTTCCACCCTCTATTACTCTTTTGACAAACCTTCAGGTATTATCATTGGCAGGATGTAAGAAAAGGAATGTGGTTTTCTCTTTATGGTCATCACCAACAGTATGTTTGCAACTGCGTTCTTTGTTGAATTTATCCTCCGTGAAAACTTTGTCCTTAAGTGACTGCAACCTATCGGAAGGAGCACTGCCCAGTGATCTTAGCTCCCTATCGTCGTTGGAAAGTTTAGATCTGAGCAAAAACAATTTCATTACCATACCTGCCAGCCTCAATAGACTTTCTCAGCTCTTGTACCTCTCCCTGTCGCACTGCAAGAGTCTTCAATCAGTGCCAGAGCTTCCATCAACCATTCAAAAAGTATATGCCGATCATTGCCCTTCCCTGGAAACCTTTTCATTAAGTGCATGTGCATCCAGAAAGTTGAACCAATTGAACTTCACATTTTCTGATTGCTTCCGACTAGTGGAGAATGAGCACAGCGACACTGTGGGAGCTATCCTACAGGGGATTCAGCTTGCTTCATCAATACCGAAATTTGTGGATGCAAATAAGGAAGTGAGTGTGCTTTACTACGTCAAGAAGCTTCTTTTCACCCCCGTAGCTCACAACACACTCATGAACTTATTACAAACATGCAGAGCATACTAA 1863 0.4155 MGHTAIPVFYNVDPSHVRKQTESFAEAFAKHDHIYGDKSEKVLKWRKALTVASGLSGYDSRDRHETEVIDEVVTMIFNKLIDASSSNMEGLGTEAVEGLVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNGSLEYLSEKELFDTTYHPWRWRAHEIQRADEMQTDCKLHLSGDLKFLSNNLRSLYWHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFSGAPNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSIHMNSLQILTLSGCSKLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLTSLQILTLAGCSELKKLPDELGSLRCLVNLNADGSGIQEVPPSITLLTNLQVLSLAGCKKRNVVFSLWSSPTVCLQLRSLLNLSSVKTLSLSDCNLSEGALPSDLSSLSSLESLDLSKNNFITIPASLNRLSQLLYLSLSHCKSLQSVPELPSTIQKVYADHCPSLETFSLSACASRKLNQLNFTFSDCFRLVENEHSDTVGAILQGIQLASSIPKFVDANKEVSVLYYVKKLLFTPVAHNTLMNLLQTCRAY* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0197 620 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 87 IPR044974 GO:0006952
Vvi15g0197 620 SUPERFAMILY L domain-like 176 440 - -
Vvi15g0197 620 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 58 IPR035897 -
Vvi15g0197 620 Pfam TIR domain 3 86 IPR000157 GO:0007165
Vvi15g0197 620 SUPERFAMILY L domain-like 385 548 - -
Vvi15g0197 620 Gene3D - 1 85 IPR035897 -
Vvi15g0197 620 ProSiteProfiles TIR domain profile. 1 80 IPR000157 GO:0007165
Vvi15g0197 620 ProSiteProfiles Leucine-rich repeat profile. 477 499 IPR001611 GO:0005515
Vvi15g0197 620 Pfam Leucine Rich Repeat 205 224 IPR011713 -
Vvi15g0197 620 Gene3D Ribonuclease Inhibitor 86 294 IPR032675 -
Vvi15g0197 620 Gene3D Ribonuclease Inhibitor 433 567 IPR032675 -
Vvi15g0197 620 Gene3D Ribonuclease Inhibitor 295 432 IPR032675 -
Vvi15g0197 620 SMART LRR_typ_2 475 498 IPR003591 -
Vvi15g0197 620 SMART LRR_typ_2 367 391 IPR003591 -
Vvi15g0197 620 SMART LRR_typ_2 320 343 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0197 Vvi-Chr15 5303834 5309994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0197 296 517 WRKY Transcription Factor Family AT4G12020 30.385 2.00e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0197 - - vvi:100245933 957.207