Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0191 ATGGGGTCTGTGGGCAACTCAGATCCTTGGGCTCCATATGATGGATATAGGGACTGTTCGCAAGGAATTTGTAATGAATATTGCCCACAGTGGTGCTACATCATCTTCTCTCCTCCTCCTCCATCTGAAGATGACTCTGGTACCGACTTCTCGCCTCTCATACTTGCTATCATCGGGATCTTGGCAAGCGCTTTCCTTTTAGTAATCTACTTCACAGTCATCTCAAAGTATTGTAGAAGAAGAAGAGGTCGGCGCACAAGTGCAGAGGGGAATGGGAATCAGGATGAAATGGTTAATGATCAGCCATTGCAGGTTGCATCGACTGGGCTAGAGGAGGGTTTTATCAAGTCCATCACAGTCTACAAGTACAAGAAAAGTGGTGGAGTGGTTGAAGGCACGGATTGCTCAGTTTGTCTCAGTGAGTTCGAAGATGGGGAGAACCTTAGACTTCTGCCCAAGTGCAACCATGCTTTCCACCTCCCCTGTATCGACACTTGGTTGAAGTCTCACTCCAGCTGTCCGCTATGCCGCTTTGATATTAGATCAGCCAAAATTTTGCCGCCTGAATTATCAGAGGCAACACAGGGCGTACCCCCTAACATCATGGTATCTGCGCTTGAAGTTCAGTCTGGAAACAGATCCCTTCTTATAATCCATGATTTAGAGAGTGGTACTATTAGACGAGAGGCTGTTGTCAGGGTTGAAGTCACTGATGATACTCCCAAGGCGACTTCTGAAGTTCATAGAGGTATGGAGAATTCAGCAGGAAGAGAAAGCACAATTGAAATTAGACAAGAAGGGTTACTTCGAAGGTCTATCTCATTTGATTCTTCATGTGAAGCTCATGTTGCAATTCCAGACATACTGCATAGTAGTGAAGATCACAGCCTATGCTTCCCAATGGAGAATATGAACGAAAGAGAAGCCATGCCTGTGACCATGAGGAGATCAATTTCGACAGGGAGATTCATGCCCCTAAGACATGGAAAGAGAAGTCCTTGTGTCTTTCCCAATTGA 1017 0.4562 MGSVGNSDPWAPYDGYRDCSQGICNEYCPQWCYIIFSPPPPSEDDSGTDFSPLILAIIGILASAFLLVIYFTVISKYCRRRRGRRTSAEGNGNQDEMVNDQPLQVASTGLEEGFIKSITVYKYKKSGGVVEGTDCSVCLSEFEDGENLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRFDIRSAKILPPELSEATQGVPPNIMVSALEVQSGNRSLLIIHDLESGTIRREAVVRVEVTDDTPKATSEVHRGMENSAGRESTIEIRQEGLLRRSISFDSSCEAHVAIPDILHSSEDHSLCFPMENMNEREAMPVTMRRSISTGRFMPLRHGKRSPCVFPN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0191 338 CDD RING-H2_EL5-like 134 177 - -
Vvi15g0191 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 185 IPR013083 -
Vvi15g0191 338 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Vvi15g0191 338 FunFam RING-H2 finger protein ATL54 110 183 - -
Vvi15g0191 338 SUPERFAMILY RING/U-box 129 183 - -
Vvi15g0191 338 Pfam Ring finger domain 134 177 IPR001841 -
Vvi15g0191 338 PANTHER RING-H2 FINGER PROTEIN ATL16 35 317 IPR044600 GO:0016567|GO:0016740
Vvi15g0191 338 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0191 Vvi-Chr15 5087915 5088931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0191 1 294 C3H Transcription Factor Family AT3G03550 44.237 4.51e-74 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0191 - - vvi:100260525 686.411