Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0173 ATGGCTCGCGACCACCGGATCGAATCGGTGCCCGAGCTTCCCCTGGTGATCGGTGATTCAGCCGAGAGCATTGAGAAAATATCGGCGGCGATTGATATTCTGAAGCAGGTCGGTGCTTATCCTGATGCGGAGAAAGCGAAAGACAGCCACGCTATTCGTCCCGGGAAGGGTAAGATGAGGAACCGCCGATACATTTCTAGGAAGGGCCCCTTGATCGTCTACGGCATGGAGGGTGCAAAGCTCGTCAAGGCGTTCCAGAACATTCCTGGGGTTGAGGTCGCTAATGTAGATAGACTTAATCTTCTGAAACTCGCTCCCGGTGGCCATCTTGGGAGGTTCGTGATTTGGACCAAATCAGCATTCAAAAAATTGGATTCAATCTACGGATCCTTCGAAAAAAAACTTCGGAGAAGAAGAATGGGTACTTGTTGCCCCGTTCAAAAATGGTTAATGCTGATTTGGCTAGGAATTCTCAACTCGGTCCCTTCTCCCCTTGCTTGTCTCAATCTCCGGCCAAGAAATCAGGATTTGGGTCTGCCAATTCCGGCCTCGATGCACCCAACTCTCCCCGGATTTTCACTGACTGCCTCTCCGCCACCGAAATGGAGCTTTCTGAAGATTACACTTGTGTTATATCCCATAGACCCATTCTCTCTCTAG 660 0.5015 MARDHRIESVPELPLVIGDSAESIEKISAAIDILKQVGAYPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGMEGAKLVKAFQNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSAFKKLDSIYGSFEKKLRRRRMGTCCPVQKWLMLIWLGILNSVPSPLACLNLRPRNQDLGLPIPASMHPTLPGFSLTASPPPKWSFLKITLVLYPIDPFSL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0173 219 FunFam Uncharacterized protein 1 165 - -
Vvi15g0173 219 Pfam Ribosomal protein L4/L1 family 24 125 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vvi15g0173 219 PANTHER 60S RIBOSOMAL PROTEIN L4 1 194 IPR045240 -
Vvi15g0173 219 Gene3D - 1 159 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vvi15g0173 219 SUPERFAMILY Ribosomal protein L4 1 126 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0173 Vvi-Chr15 4647926 4648585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0173 1 160 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 69.375 2.05e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0173 K02930 - vvi:100241789 413.69