Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0171 ATGATAGCTCAGACTAAAGTTTCCCTTGACAGAATTACATCCTTTCTTCGTCTGGATGACCTGCAGAGTGATGTCATCGAGAGGCTTCCAAAAGGTAGTTTTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCATAATCCAACGCTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGTAAGTCAAGTTTACTCTCCTGTATGATGGGAGAGGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCATATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGCAGAGAACATCTTGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTACTTGAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACAGTTATAGGTGAGTGGGGAATCAATTTGAGTGGTGGCTAG 501 0.4411 MIAQTKVSLDRITSFLRLDDLQSDVIERLPKGSFDTAIEIVDGNFSWDLSSHNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCMMGEVPKISGILKLCGTKAYVAQSPWIQSGKIAENILFGKEMDRERYERVLDACYLKKDLEVLSFGDQTVIGEWGINLSGG* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0171 166 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 166 - -
Vvi15g0171 166 Pfam ABC transporter 56 126 IPR003439 GO:0005524
Vvi15g0171 166 Gene3D - 13 166 IPR027417 -
Vvi15g0171 166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 166 IPR027417 -
Vvi15g0171 166 FunFam Uncharacterized protein 13 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0171 Vvi-Chr15 4641597 4642097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0171 9 166 Calmodulin-binding Proteins AT2G36910 29.310 4.97e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0171 - K05666 vvi:100254999 314.694