Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0158 ATGGCGCAGCAGAAGATTCAGATCAAGAAGATTGGCAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACAGGAGCTCTCAACGCTGTGTGATGGTGAGATAGCGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGGTTAGTTTTCTCATCTCTCCCATTCCTTCTTTTTATACATAGATATATGAATCTCAGTGCATTTTGCAGGCAATCCTAG 261 0.433 MAQQKIQIKKIGNTAARQVTFSKRRRGLFKKAQELSTLCDGEIALIVFSAAGKLFEYSSSRLVFSSLPFLLFIHRYMNLSAFCRQS* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0158 86 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Vvi15g0158 86 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi15g0158 86 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 76 - -
Vvi15g0158 86 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Vvi15g0158 86 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g0158 86 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi15g0158 86 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g0158 86 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi15g0158 86 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0158 Vvi-Chr15 4417318 4417578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0158 1 62 MADS-box Gene Family AT4G24540 74.194 1.02e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi15g0158 SRF-TF 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0158 - - vvi:100853161 110.153