Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0156 ATGGGTACTTCAGGGGAAGGTGCGGCAGATGATGTTGCTTCTAATAAATTGCAGCAGAGACAAATTCCTGATACAGGGGTCCATGCATCACAATCTCATCAAGAAGCAATCATGCCCTCCATCATACCTGAGAAGGCACCAGAAGATGGATACAACTGGCGAAAGTGTGGGCAAAAGCATGTTAAAGGAAATGAGTTTATTCGTAGCTATTACAGATGA 219 0.4384 MGTSGEGAADDVASNKLQQRQIPDTGVHASQSHQEAIMPSIIPEKAPEDGYNWRKCGQKHVKGNEFIRSYYR* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0156 72 MobiDBLite consensus disorder prediction 1 50 - -
Vvi15g0156 72 Pfam WRKY DNA -binding domain 48 72 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g0156 72 ProSiteProfiles WRKY domain profile. 42 72 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g0156 72 Gene3D WRKY domain 30 72 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g0156 72 MobiDBLite consensus disorder prediction 14 37 - -
Vvi15g0156 72 SUPERFAMILY WRKY DNA-binding domain 43 72 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0156 Vvi-Chr15 4408948 4409166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0156 25 72 WRKY Transcription Factor Family AT2G04880 62.500 1.57e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi15g0156 WRKY 1.4e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0156 - K18834 vvi:100256306 144.05