Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0155 ATGTTCAGTAGCCATGACTATGCATATTGGAGGCTTGCTTTTGAGACCGCAGATGAGACTGACGCACGTCTAGCTGCAACAGGCCTCAAGAAGAGTGCACTACGTCAGATTCCAGTGGCTGTATATGGCTCAGGGACAAACATCCCTGCTACTGACTGTCCTATTTGCCTAGGAGAATTCGAGCAAGGGGATAAAGTTCGAGTGCTCCCTAAATGTCACCATGGATTCCATATGAAGTGCATAGACACATGGCTGGTGTCACACTCATCTTGTCCAACTTGCAGGCACTCACTGCTAGAACACCCACCAGCTTCTGATGCAGTGGATGTGCATGTGGGTACTGGAATTAGGCATCCTGGAAATGCACCAGGAGGGCAGCCTGATGTTTCTGTAGGTGTTGATGGGGAGATTTGA 414 0.4928 MFSSHDYAYWRLAFETADETDARLAATGLKKSALRQIPVAVYGSGTNIPATDCPICLGEFEQGDKVRVLPKCHHGFHMKCIDTWLVSHSSCPTCRHSLLEHPPASDAVDVHVGTGIRHPGNAPGGQPDVSVGVDGEI* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0155 137 MobiDBLite consensus disorder prediction 118 137 - -
Vvi15g0155 137 Pfam Ring finger domain 52 95 IPR001841 -
Vvi15g0155 137 SUPERFAMILY RING/U-box 35 101 - -
Vvi15g0155 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 100 IPR013083 -
Vvi15g0155 137 CDD RING-H2_EL5-like 52 95 - -
Vvi15g0155 137 FunFam RING-H2 finger protein ATL72-like 20 99 - -
Vvi15g0155 137 PANTHER RING-H2 FINGER PROTEIN ATL78 19 102 IPR044602 GO:0016567|GO:0016740
Vvi15g0155 137 SMART ring_2 53 94 IPR001841 -
Vvi15g0155 137 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0155 Vvi-Chr15 4356512 4356925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0155 25 108 C3H Transcription Factor Family AT3G10910 69.412 3.47e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0155 - K19040 vvi:109124028 295.434