Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0148 ATGGCGCGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGAAGAAGAGGGCTTTTTAAGAAAGCACAGGACATCTCAATACTGTGTGATGCCGAGATAGCGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGGTATGTGATAGATTGA 198 0.4394 MARQKIQIKKIDNTAARQVTFSKRRRGLFKKAQDISILCDAEIALIVFSAAGKLFEYSSSRYVID* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0148 65 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi15g0148 65 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g0148 65 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g0148 65 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
Vvi15g0148 65 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi15g0148 65 FunFam Uncharacterized protein 13 65 - -
Vvi15g0148 65 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Vvi15g0148 65 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Vvi15g0148 65 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi15g0148 65 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0148 Vvi-Chr15 3906887 3910072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0148 1 61 MADS-box Gene Family AT4G24540 77.049 3.04e-27 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi15g0148 SRF-TF 3.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0148 - - vvi:100265532 113.62