Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g0148 | ATGGCGCGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGAAGAAGAGGGCTTTTTAAGAAAGCACAGGACATCTCAATACTGTGTGATGCCGAGATAGCGCTTATTGTCTTCTCAGCAGCAGGAAAGCTCTTTGAGTATTCAAGCTCAAGGTATGTGATAGATTGA | 198 | 0.4394 | MARQKIQIKKIDNTAARQVTFSKRRRGLFKKAQDISILCDAEIALIVFSAAGKLFEYSSSRYVID* | 66 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g0148 | 65 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g0148 | 65 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g0148 | 65 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g0148 | 65 | Gene3D | - | 13 | 65 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi15g0148 | 65 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g0148 | 65 | FunFam | Uncharacterized protein | 13 | 65 | - | - | |
Vvi15g0148 | 65 | SUPERFAMILY | SRF-like | 1 | 61 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi15g0148 | 65 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 60 | - | - | |
Vvi15g0148 | 65 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi15g0148 | 65 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi15g0148 | Vvi-Chr15 | 3906887 | 3910072 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi15g0148 | 1 | 61 | MADS-box Gene Family | AT4G24540 | 77.049 | 3.04e-27 | 96.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Vvi15g0148 | SRF-TF | 3.2e-24 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g0148 | - | - | vvi:100265532 | 113.62 |