Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0140 ATGGGCAATGGAATTGAGAGTGAACCGTGGGTGAGGTATGAGTCGAAGTATATTGAGGAAATTGCTGAAGTCATCCGTAAAAAATTGGATCCTAAGCTTTTGCATGTTGATGATGATATAGTTGGGATAGATTTTCGCTTAAAAGAACTAAAATCATTGATAAATAGTCAATTACATGATGTTCGTGTGGTTGGGATCTATGGAACCGGTGGAATTGGCAAAACTACCATTGCCAAGATTGTTTATAATGAGATTCAATGTGAATTCAATGGTGCTAGCTTTCTTGAAAATGTCAAAGAGAGTTTCAACAAGGGTTGTCAACTTCAACTACAACAAAAACTTCTTCAAGGTATAGCGGGGCAAAAAATAGAGTTGAGTAATATCGATGATGGAATCAATATGATAAAGAATACACTTGGCTCAAAAAAGGTTCTTATTGTTACTGATGATGTGGATCGTAGGGAGCAATTAGAGTCATTAGTTGGAAGTAGGAACTGGTTTGGTGCAGGAACTACAATTATTGTAACAACTAGAGACCAACTATTGCTACGTTATTATGGAGTCGATGTAACATATGAGGTGAAGAAGTTAGATAATGTGGAAGCTATTGAACTCTTCAACAAGCATGCCTTTAAACAAAATGCTCCTAAAGAAGATTATGTAACCCTCTCAAATTCCATGGTAGCTTATGCTCAGGGCCTTCCTTTAGCCCTTAAAGTTCTAGGTAGTTCTCTTCATGGCATGACGATAGATGAATGGAAAAGTGCATCGAATAAACTAAAAAACAATCCTAAGAAGGAAATTAATGATGTGCTTAGAATAAGCTATGATATGCTTGATGGTTCGGAAAAGAAGGTTTTCCTTGACATTGCATGTTTTTTTGAAGGGGAAGACAAAGCTTTTGTATCAAAAATATTGGATGGCTGCAATTTACATGCAACATACAACATAAGAGTTCTTTGTGATAAATGCCTAATAACTATCTCAGACAGTATGATACAAATGCATAACTTGATACAACAAATGGGTTGGGCAATTATTCGTGAAGAATATCCTGAAGACCCAAGCAAATGGAGTAGGTTGTGGGACCTAAATGATATTTATGATGCATTTTCTAGGCAAAAGCAATATAAAAAAACTTTGGAAAGGGAAGAAGCATCATGA 1164 0.3591 MGNGIESEPWVRYESKYIEEIAEVIRKKLDPKLLHVDDDIVGIDFRLKELKSLINSQLHDVRVVGIYGTGGIGKTTIAKIVYNEIQCEFNGASFLENVKESFNKGCQLQLQQKLLQGIAGQKIELSNIDDGINMIKNTLGSKKVLIVTDDVDRREQLESLVGSRNWFGAGTTIIVTTRDQLLLRYYGVDVTYEVKKLDNVEAIELFNKHAFKQNAPKEDYVTLSNSMVAYAQGLPLALKVLGSSLHGMTIDEWKSASNKLKNNPKKEINDVLRISYDMLDGSEKKVFLDIACFFEGEDKAFVSKILDGCNLHATYNIRVLCDKCLITISDSMIQMHNLIQQMGWAIIREEYPEDPSKWSRLWDLNDIYDAFSRQKQYKKTLEREEAS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0140 387 PRINTS Disease resistance protein signature 63 78 - -
Vvi15g0140 387 PRINTS Disease resistance protein signature 138 152 - -
Vvi15g0140 387 PRINTS Disease resistance protein signature 231 245 - -
Vvi15g0140 387 Gene3D - 18 190 IPR027417 -
Vvi15g0140 387 SUPERFAMILY "Winged helix" DNA-binding domain 267 369 IPR036390 -
Vvi15g0140 387 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 369 IPR044974 GO:0006952
Vvi15g0140 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 290 IPR027417 -
Vvi15g0140 387 Gene3D - 196 280 IPR042197 -
Vvi15g0140 387 FunFam Disease resistance protein (TIR-NBS-LRR class) 198 280 - -
Vvi15g0140 387 Pfam NB-ARC domain 53 272 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0140 Vvi-Chr15 3728979 3732547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0140 41 387 WRKY Transcription Factor Family AT5G45050 36.158 8.71e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0140 - - vvi:100249847 692.96