Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0139 ATGGAATGGATATGGTCAACTCATTTAAGTGACTTGATATTGGGAAGAGGTACACTTTCTAGTGGAAAAGAAATTGCTATAAAGAGGCTATCTAAAAGCTCTGGGCAAGGTGCAGTAGAATTCAAAAATGAGGTTGTATTGGTAGCCAAGCTTCAACACAGAAATCTAGTGAGGTTATTGGGATTTTGCCTGGAAGGGGAAGAGAAGATACTTGTCTATGAATATGTGCCCAACAAAAGCCTCGACTACTTCCTGTTTGATCCTGATAAACAAGGACAATTGAATTGGTCAAGACAGTACAAGATTATTGGAGGAATAGCCCGAGGGATTCTTTTTCTTCATGAAGATTCCAGGCTCAGAGTTATACATCGTGATCTAAAAGCCGGCAATGTTTTGCTAGATGGTGATATGAACCCTAATATTTCAGATTTTGGCATGGCAAGGATTTTTGGTGTAGATCAAACTCAAGGAAATACAAACAGAGTTGTTGGCACATAG 498 0.3916 MEWIWSTHLSDLILGRGTLSSGKEIAIKRLSKSSGQGAVEFKNEVVLVAKLQHRNLVRLLGFCLEGEEKILVYEYVPNKSLDYFLFDPDKQGQLNWSRQYKIIGGIARGILFLHEDSRLRVIHRDLKAGNVLLDGDMNPNISDFGMARIFGVDQTQGNTNRVVGT* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0139 165 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 76 165 - -
Vvi15g0139 165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vvi15g0139 165 Pfam Protein tyrosine and serine/threonine kinase 21 154 IPR001245 GO:0004672|GO:0006468
Vvi15g0139 165 SUPERFAMILY Protein kinase-like (PK-like) 14 165 IPR011009 -
Vvi15g0139 165 Gene3D Phosphorylase Kinase; domain 1 10 75 - -
Vvi15g0139 165 ProSiteProfiles Protein kinase domain profile. 1 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0139 165 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 165 - -
Vvi15g0139 165 SMART serkin_6 8 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0139 165 Gene3D Transferase(Phosphotransferase) domain 1 76 165 - -
Vvi15g0139 165 FunFam Uncharacterized protein 10 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0139 Vvi-Chr15 3725973 3726621 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0139 16 165 Receptor kinase-like Gene Family AT4G11530 80.000 1.73e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi15g0139 PK_Tyr_Ser-Thr 9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0139 - - vvi:100257888 287.345